DreEX0053719 @ danRer10
Exon Skipping
Gene
ENSDARG00000045936 | pax6b
Description
paired box 6b [Source:ZFIN;Acc:ZDB-GENE-001031-1]
Coordinates
chr7:15623955-15627211:+
Coord C1 exon
chr7:15623955-15624101
Coord A exon
chr7:15626890-15626960
Coord C2 exon
chr7:15627158-15627211
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTGCTCTATCCTAGGAA
3' ss Score
9.54
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GGAATTTCCTTCCAGATAAGAGGTACGCTGGGAAAACGTATATATTTTTTGGACGAAGAAACTACCATTGGACAGTCATTGTTTATTTCCAAGTTTCACTGTTTTGCTCGGAAGGGCTCAGGCGGTGGAGCAGAATGCCTCAAAAAG
Seq A exon
GAATGATCTAAATAGTCAGACGCAAATGAAGGGCTAAATTGTTATAAACGGACAGTCAACTCTGTTACCAG
Seq C2 exon
AATACCATAACCAACCCACGTGGGAATCAGGAGTGGCGTCCATGATGCAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045936_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0029213=PAX=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGTACGCTGGGAAAACG
R:
GTTTTGCATCATGGACGCCAC
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]