DreEX0053812 @ danRer10
Exon Skipping
Gene
ENSDARG00000013615 | pbx3b
Description
pre-B-cell leukemia homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-000405-3]
Coordinates
chr8:33931385-33935068:-
Coord C1 exon
chr8:33934903-33935068
Coord A exon
chr8:33934260-33934337
Coord C2 exon
chr8:33931385-33931474
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTTTCTTGCACCCAGGAT
3' ss Score
9.45
5' ss Seq
CTGGTACTG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GTATCCAACTGGTTCGGCAACAAGAGGATCCGCTACAAAAAAAACATCGGCAAGTTCCAAGAGGAGGCCAACCTGTATGCCGCTAAGACAGCCGTGACTGCAGCACATGCAGCAGCTGCCGCCGTCCAGAATAGTCAGACCAACTCACCCACCACACCCAACTCCG
Seq A exon
GATTCCAGATGAAAGATGAAGAATTTCAGCTGGATTCTGCAGAGAACAAAAACACTCTATTAACCAACATGTTCACTG
Seq C2 exon
GTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGTCCTGGGGGGGAATCCCATGTATAGTCCACATGGCTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013615_MULTIEX1-6/8=5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.491 C2=0.443
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(17.5=89.3),PF0004624=Homeobox=PD(21.7=23.2)
A:
PF0044324=UCH=PD(10.4=92.6)
C2:
NO
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAAGAGGATCCGCTAC
R:
TGACTGATAACATGGCGCAGG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]