DreEX0053813 @ danRer10
Exon Skipping
Gene
ENSDARG00000013615 | pbx3b
Description
pre-B-cell leukemia homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-000405-3]
Coordinates
chr8:33931385-33934337:-
Coord C1 exon
chr8:33934260-33934337
Coord A exon
chr8:33933726-33933838
Coord C2 exon
chr8:33931385-33931474
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTACATCTTTCCTTTCTAGGTT
3' ss Score
12.73
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GATTCCAGATGAAAGATGAAGAATTTCAGCTGGATTCTGCAGAGAACAAAAACACTCTATTAACCAACATGTTCACTG
Seq A exon
GTTCGTCAGGTTCTTTTAACCTCCCAAACTCGGGGGACTTGTTCATGAGCATGCAGAATCTGAATGGGGATTCTTACCAAGGGGCACAAGTCGGAGCCAATGTGCAGTCACAG
Seq C2 exon
GTGGATACCCTGCGCCATGTTATCAGTCAGACGGCAGGATACAATGATGTCCTGGGGGGGAATCCCATGTATAGTCCACATGGCTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013615_MULTIEX1-7/8=6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.491 A=0.421 C2=0.443
Domain overlap (PFAM):
C1:
PF0044324=UCH=PD(10.4=92.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGATGAAAGATGAAGAATTTCAG
R:
TTCAAGCCATGTGGACTATACA
Band lengths:
164-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]