RnoEX0063683 @ rn6
Exon Skipping
Gene
ENSRNOG00000022162 | Pbx3
Description
PBX homeobox 3 [Source:RGD Symbol;Acc:1307198]
Coordinates
chr3:13245413-13247875:-
Coord C1 exon
chr3:13247710-13247875
Coord A exon
chr3:13246290-13246402
Coord C2 exon
chr3:13245413-13245502
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTAACTCTTTCCTTTCCAGGTT
3' ss Score
11.89
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTATCCAACTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAACATCGGCAAATTTCAAGAGGAGGCCAATCTCTATGCTGCAAAAACAGCCGTGACAGCCGCACACGCAGTGGCCGCAGCCGTGCAGAACAACCAGACCAACTCACCCACCACGCCAAACTCTG
Seq A exon
GTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAGTCACAG
Seq C2 exon
GTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGACGGCCTTGGAGCAAACTCACTGTACAGTCCGCATAACTTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022162_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.789 C2=0.933
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=23.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAAACGAATCAGGTACA
R:
GTTATGCGGACTGTACAGTGAGT
Band lengths:
235-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]