GgaEX0000984 @ galGal4
Exon Skipping
Gene
ENSGALG00000000972 | PBX3
Description
pre-B-cell leukemia transcription factor 3 [Source:RefSeq peptide;Acc:NP_001025849]
Coordinates
chr17:9818463-9820774:+
Coord C1 exon
chr17:9818463-9818628
Coord A exon
chr17:9819764-9819876
Coord C2 exon
chr17:9820685-9820774
Length
113 bp
Sequences
Splice sites
3' ss Seq
CCTAACTCTTTCCTTTCCAGGTT
3' ss Score
11.47
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTCCAACTGGTTTGGCAATAAGAGAATTAGGTACAAGAAGAACATTGGGAAGTTCCAGGAAGAAGCCAATCTTTATGCAGCGAAGACGGCTGTGACTGCAGCGCATGCCGTGGCCGCAGCCGTCCAGAACAACCAGACCAACTCCCCCACCACGCCAAACTCTG
Seq A exon
GTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAGGGGTCCCAAGTCGGAGCCAATGTGCAGTCACAG
Seq C2 exon
GTGGATACCCTGCGTCATGTTATCAATCAGACGGGAGGATACAGTGATGGCTTGGGAGGAAATTCACTGTACAGTCCACATAATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000972-'23-14,'23-12,24-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.339 A=0.842 C2=0.967
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=23.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGGTTTGGCAATAAGAGAA
R:
ATGTGGACTGTACAGTGAATTTCCT
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]