BtaEX0026040 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013314 | PBX3
Description
Bos taurus pre-B-cell leukemia homeobox 3 (PBX3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046453]
Coordinates
chr11:96766772-96769319:+
Coord C1 exon
chr11:96766772-96766937
Coord A exon
chr11:96768341-96768453
Coord C2 exon
chr11:96769230-96769319
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTTAACTCTTTCCTTTCCAGGTT
3' ss Score
11.89
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGTCCAACTGGTTTGGCAACAAACGAATCAGGTACAAGAAGAATATTGGCAAGTTTCAGGAAGAAGCCAACCTCTATGCTGCAAAGACAGCCGTGACAGCCGCGCACGCAGTGGCCGCAGCCGTGCAGAACAACCAGACCAACTCGCCCACCACGCCGAATTCTG
Seq A exon
GTTCTTCTGGTTCTTTTAACCTCCCAAATTCTGGGGACATGTTCATGAACATGCAGAGTCTGAATGGGGATTCTTACCAAGGGTCCCAAGTCGGAGCCAATGTGCAATCACAG
Seq C2 exon
GTGGATACCCTCCGTCATGTTATCAATCAGACGGGAGGCTACAGTGATGGCCTTGGAGGAAATTCACTGTACAGTCCACATAATTTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013314_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.842 C2=0.867
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=23.2)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAAACGAATCAGGTACA
R:
TTATGTGGACTGTACAGTGAATTTCC
Band lengths:
234-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development