DreEX0055285 @ danRer10
Exon Skipping
Gene
ENSDARG00000029905 | phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-159]
Coordinates
chr21:4344430-4347467:+
Coord C1 exon
chr21:4344430-4344541
Coord A exon
chr21:4345124-4345217
Coord C2 exon
chr21:4347309-4347467
Length
94 bp
Sequences
Splice sites
3' ss Seq
AACCACGTGGTTATTTGTAGAGA
3' ss Score
3.6
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAATAGGTCAAGGATGAATCGACTCTCACAATTCATTTAAATCATAGATTCATTCACAAAAAATAACCCACTCTAGCCTAAATAAGGACTGAACCGATGTGAACGCTAACAG
Seq A exon
AGAAAGAGAGAGAGAGATATTTGAGACAGTCAGCCTTCATTTCAGCCCAGTCTTCATCAACATGGATGTCTTGACAGACCAAGACGTGCAAAAG
Seq C2 exon
TTCCGGGACGAGGGCTATCTGGTGCTGGAAGGCCTTCTGTCTCCAGAGGAGTGCGATGCTTTACGGAGGCGCATGAGTGAGATTATCGAGAGCATGGACGTTCCTGAACACTGCAGGACACAGTTCTCCACCGACCATGACGAGCAGCTGAAAACGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029905_MULTIEX1-1/7=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.199
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF057218=PhyH=PU(21.0=98.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGAACCGATGTGAACGCT
R:
TTTCAGCTGCTCGTCATGGTC
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]