RnoEX0065622 @ rn6
Exon Skipping
Gene
ENSRNOG00000016794 | Phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:RGD Symbol;Acc:1310377]
Coordinates
chr3:8826693-8835963:+
Coord C1 exon
chr3:8826693-8832493
Coord A exon
chr3:8832735-8832813
Coord C2 exon
chr3:8835805-8835963
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTGAACTTTCTCCTCTCCAGCCC
3' ss Score
8.34
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCTCATTGTCTATGTCCTCTGCAGAGCCAGCAGGTGGTTCTGACCACCCTGCCACCCCACTGTAGACACCGGTCATCGTGGGTCTAAGGCTAGAGAACAGGAACCATCTCTGTCTTCCCTCATTCTGAGGGCTTCTGTTCCCCAGGACCCCTCATCTACCTCCCCTTAGCACCTCTTTAGAGCCTTTCTCTCAGCATCTAGAGGGCTTCAGACCAAAAAATGAAGAAGCACTCAAAGTTCTCTTCCTCCGACCCTTTGGCCTTCGCCATCCAAAGCCACTCAGGGCCCAAGCCCTGCAATCCAACAGATTTCCCTCTTGGGTAAATTTAGATTCTGTGACTGGGGACTTTCTAGCCTTTTCCTTCCTCATACTATTGGTGACTCACACATTCTGGCAGCTTCCTGCCTGCCTCCCCACGCTAAACACATCCCTAGTACTGCTCAGGAGTGGATTTTAGAGAAAAACTTGAGGGATCAAGACAGCCTGTGAAGGGAAACAG
Seq A exon
CCCTGGAGCCATCGAGCTGAGACAGCAGAGTCCTGCAGCATTGCCCATGGCCTGCCTGAGTCCCTCACAACTCAAGAAG
Seq C2 exon
TTCCAGGAGGACGGGTTTCTGCTGTTGGAAGGATTCTTCACAGCAGACGAGTGTGTGGTCATGCAGCAGAGGATTGGTGAGATTGTGGCTGAGATGGACGTCCCTCTGCACTGCCGGACAGAATTTTCCACCCAGGAAGATGAGCAGCTTCAAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016794_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF057218=PhyH=PU(21.0=98.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGACAGCCTGTGAAGGGA
R:
GAAGCTGCTCATCTTCCTGGG
Band lengths:
177-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]