DreEX0058000 @ danRer10
Exon Skipping
Gene
ENSDARG00000074468 | prdm11
Description
PR domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-061221-1]
Coordinates
chr25:7568022-7578421:-
Coord C1 exon
chr25:7578234-7578421
Coord A exon
chr25:7574283-7574816
Coord C2 exon
chr25:7568022-7573961
Length
534 bp
Sequences
Splice sites
3' ss Seq
ACAGCACCATTGTATTACAGGAG
3' ss Score
4.5
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTTATCCACATTACTTCTGATGAGAGTGAACAGAACCTGAGTGCGTTTCAACATGGTGATCAAATCTACTTTCGAGTGTGTCACAGACTGAAGGTGGGCGAGAAACTTGGTGTTTGGTACAGCAGCGAGTACATGAAGCGACTGCAGAGTGTGTCCCGGGACAGCATTGACCACAATCTGGACACAG
Seq A exon
GAGTAAAATCAGAAGACCAGGAGGAGCCTAAAGGCCCAGTGTTAAGATCCGCAATGCACGGTAGAAGGACCCTAAGCAAGCATGGAAGCGATGAGGCAGAAAACCAGCCCCAGGCCAAGAAAAAGAAGATTGACCTCATTTTCAAAGATGTCCTGGAAGCATCTCTAGAGGCTAATCAAAGTCAGAACAACCCCCTGAACAGCACCTTGTCTTTTCCAAGAGCACGAACAAATGTCTGCCAGGTTTTCTGCCATCCTGACGCAGAGAGTAAAGAGTCCGTCTTCACCTCTGGGTTGGTTTCAATGGATCACCACGAGATTGGCTTTGATGGGAAATGCATTAAAATGGAAAACACGGAAGAGGATGAGGCCTTGACCAGTGAAGGACCATCCACATCTTTCTGCCCAAACTGTGTGAGGCTAAAACGTCGAATCCGTGAGCTGGAGGCCGAACTGCACCGTCTCAGAGGACAGGGGCATGCGGAGGTTAAGCCTGTACCAGCTTCTGAGATGCTTGCTGGTGAGGACCACAGAG
Seq C2 exon
ACACCATGACGCCCATCCCAGCAGCCCTTGAAGAGGATGACCAGGATGTTGATTCTGCCGATGAATCTATTTCTGCCGACCTCCTGGTGGCTGCAGATGAGTCTTCAAAACTCTCAGTGGGTTCGGGTCGTCGGATTCGCAGATTCAAACAGGAGTGGCTGAAGAAGTTCTGGTTTCTCCGTTATTCACCTACACTGAATGAGATGTGGTGCCACGTGTGCCGCCAATACACCGTCCAGTCCTCCCGCACCTCTGCGTTTATCATCGGCTCCAAGCAATTTAAAATCCACACCATTAAACTGCACAGCCAGAGCAATCTGCACAAGAAGTGCCTTCAGCTTTACAAACTTCGAATGCACCCGGAGAAGACAGAGGAGATGTGTCGTAACATGATGACTCTTCTGAATGCTGCCTATCATCTGGCTCTTGAAGGACGGCCGTTTTCTGATCTGCGCCCCTTAGCGGAGCTCCTCAAGAAGTGCGACCTCAAAGTGGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074468_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.570 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGCGAGTACATGAAGC
R:
TGGAGCCGATGATAAACGCAG
Band lengths:
342-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]