GgaEX1045882 @ galGal4
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr5:21598642-21605585:+
Coord C1 exon
chr5:21598642-21598829
Coord A exon
chr5:21601922-21602572
Coord C2 exon
chr5:21603421-21605585
Length
651 bp
Sequences
Splice sites
3' ss Seq
CCCCTCGTTTTCCTTTCTAGGAG
3' ss Score
12.92
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATTAACAGAAATCTCACAACAG
Seq A exon
GAGACAAAAAATTACAGAAGGAAAAGTCAGAAAAGAATGCAGATAATCAAGAGGACACAAGGGCTCCACTCCACTTCACCACATTAAAGCAAGGGAAGAGCCCCTACAAACGCAGCTATGACGAGGGGGAGTCCCACCCCCAAACAAAGAAAAAAAAGATTGACCTCATCTTCAAAGATGTCCTGGAGGCCTCTTTGGAGTCTGCCAAATTTGAAGAGAAACAGTTAGCAACAAGTACACCGCTTTCCACAAGAGCAACATCTAAATACCAGGCAGAAGAGATCTTTGAGAGGTGCAGTAGTGCCATGCAGCATGGCTCCCTAAATCTCAGCAGAAACAGAAGCGAAGAGGAGTGGAAGGCCCCTCATGGTTCCTCTTTCAGTTCTGCCAAAGAAGTGGGAGTCCTTGAAGACGAGGAAGAAGAGCCTCTGTCTCTGAAAGCAGACAGCCCTACCGAGCTGTCACTGGCTTCTGCAGAAGGCAACTCCCATGAAATTCCTACCACCTCCTTCTGCCCCAATTGCATCCGGTTGAAGAAGAAAATCAGAGAGCTACAGGCTGAGTTAGACATGCTGAGATCTGGGAAGTTACCTGAGCCACCTGTGCTACCACCCCAGGTACCTGAGCTCCAAGAGTTCTCAGACCCCACAG
Seq C2 exon
CTTCAGAGAGTATCATCTCTGTTCCCACCATCATGGAGGATGACGATCAGGAGGTGGATTCTGCTGATGAATCAGTTTCCAATGAAATGATTGCTGCTACAGATGAGCCTTCCAAGATGTCTTCTGCAACGGGACGGAGAATACGGAGGTTTAAGCAAGAGTGGCTTAAGAAGTTTTGGTTTCTGCGGTACTCCCCGACATTGAATGAAATGTGGTGCCATGTCTGTAGGCAATACACAGTGCAATCCTCTCGGACTTCAGCTTTCATCATTGGCTCAAAGCAGTTCAAGATACACACAATAAAACTTCATAGCCAGAGCAACCTCCACAAGAAGTGCCTGCAGCTTTACAAGCTCAGAATGCACCCAGAGAAGACAGAAGAGATGTGTCGAAATATGACTTTACTCTTCAATACAGCCTACCACTTGGCACTGGAGGGCAGGCCCTACTATGACTTTCGGCCTCTGGCAGAGCTATTGAGAAAGTGTGAACTCAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053-'14-22,'14-20,17-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.705 C2=NA
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(41.8=64.1)
A:
NO
C2:
NA
Main Skipping Isoform:
ENSGALT00000013067fB1283
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTTCCGTGCCTGTCGTG
R:
ATTGCCTACAGACATGGCACC
Band lengths:
357-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]