GgaEX0011543 @ galGal4
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr5:21598642-21602572:+
Coord C1 exon
chr5:21598642-21598829
Coord A exon
chr5:21601020-21601142
Coord C2 exon
chr5:21601922-21602572
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCATGAATATTCTTTAAAAGCAT
3' ss Score
3.03
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATTAACAGAAATCTCACAACAG
Seq A exon
CATACAAAAGCAAAAACAGAATAAAGCAGCGTCTTGTTTGGGAAGCCATCAATGCTTGAAGTTATTTACAAGATAGAAGAATGATGGAATTTGAGCCAAACCTATCGTCTTTTGAATTTCCAG
Seq C2 exon
GAGACAAAAAATTACAGAAGGAAAAGTCAGAAAAGAATGCAGATAATCAAGAGGACACAAGGGCTCCACTCCACTTCACCACATTAAAGCAAGGGAAGAGCCCCTACAAACGCAGCTATGACGAGGGGGAGTCCCACCCCCAAACAAAGAAAAAAAAGATTGACCTCATCTTCAAAGATGTCCTGGAGGCCTCTTTGGAGTCTGCCAAATTTGAAGAGAAACAGTTAGCAACAAGTACACCGCTTTCCACAAGAGCAACATCTAAATACCAGGCAGAAGAGATCTTTGAGAGGTGCAGTAGTGCCATGCAGCATGGCTCCCTAAATCTCAGCAGAAACAGAAGCGAAGAGGAGTGGAAGGCCCCTCATGGTTCCTCTTTCAGTTCTGCCAAAGAAGTGGGAGTCCTTGAAGACGAGGAAGAAGAGCCTCTGTCTCTGAAAGCAGACAGCCCTACCGAGCTGTCACTGGCTTCTGCAGAAGGCAACTCCCATGAAATTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.705
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(41.8=64.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000013067fB1283
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTTCCGTGCCTGTCGTG
R:
CCTCGTCATAGCTGCGTTTGT
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]