GgaEX0011543 @ galGal3
Exon Skipping
Gene
ENSGALG00000008053 | PRDM11
Description
NA
Coordinates
chr5:24387865-24391379:+
Coord C1 exon
chr5:24387865-24388052
Coord A exon
chr5:24390244-24390366
Coord C2 exon
chr5:24391146-24391379
Length
123 bp
Sequences
Splice sites
3' ss Seq
GCATGAATATTCTTTAAAAGCAT
3' ss Score
3.03
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATCAACAGAAATCTCACAACAG
Seq A exon
CATACAAAAGCAAAAACAGAATAAAGCAGCGTCTTGTTTGGGAAGCCATCAATGCTTGAAGTTATTTACAAGATAGAAGAATGATGGAATTTGAGCCAAACCTATCGTCTTTTGAATTTCCAG
Seq C2 exon
GAGACAAAAAATTACAGAAGGAAAAGTCAGAAAAGAATGCAGATAATCAAGAGGACACAAGGGCTCCACTCCACTTCACCACATTAAAGCAAGGGAAGAGCCCCTACAAACGCAGCTATGACGAGGGGGAGTCCCACCCCCAAACAAAGAAAAAAAAGATTGACCTCATCTTCAAAGATGTCCTGGAGGCCTCTTTGGAGTCTGCCAAATTTGAAGAGAAACAGTTAGCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.632
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(41.8=64.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACTTCCGTGCCTGTCGTG
R:
CCTCGTCATAGCTGCGTTTGT
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event