GgaINT0058052 @ galGal4
Intron Retention
Gene
ENSGALG00000008053 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr5:21598642-21602572:+
Coord C1 exon
chr5:21598642-21598829
Coord A exon
chr5:21598830-21601921
Coord C2 exon
chr5:21601922-21602572
Length
3092 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCCTCGTTTTCCTTTCTAGGAG
3' ss Score
12.92
Exon sequences
Seq C1 exon
GTACGTGATCATATCCCGGGAGGAGAGGGAGCAGAACCTGATGGCCTTCCAGCACAGTGAAAGGATTTACTTCCGTGCCTGTCGTGACATCCGGCCTGGGGAGAAGCTGCGGGTCTGGTACAGTGAGGATTACATGAAGCGGCTGCATAGCATGTCCCAGGAGACCATTAACAGAAATCTCACAACAG
Seq A exon
GTGAGTCCCGCTCTTTCTGCCCTCTTCCCCAGTCCCTGTTGTCCATCACCCTTGTTGCACCATGTGTAGTGGGTGAAGTAGGTCATGCCCAGGCTGTGCAAGGAGACTTGCGTTTCTACAAGCAGCTCATGTCTTGGCAAGAGCCTCCAGTTCTGCAATGAATGCGTGTAGAAGAATGATGTTACCACTATCTTGGAGATCATGAAATAATTATTTGTGTTGTGTCGTGTTGTGCTGTGTCGTGTTGTGTTGTATCGTCTTTGTGCTGCTAGAGCTTGATACAGTGCCCAGAGAACACAGAGCTCCTTCATCACAAGACTTTGTGACTTGAGATTTGCAAAGCTGGTGGTCCCACAGTCTGTCACTGGGTTTTCTTTGACCATGCTGCTTTCTCTGGCTCTTGTGAGGGAACTCTGGCTGGTTTTGTGTGTATACATAAGAGAGATTTCCTTGGTATGTTTGTATGTTCATTTTCCTGGCTTAATTTATCTCCTCTTTCTTCAGAAAGATAATGTGGGATCAGCGCGACATCAGCTAGAGACTCCTTAGTCTCACAACCTTAGAGTGCTTGTACGAAGTACAGGAGGCTTTGTACTTGTCAGCTTCATTCTTCCCTGGATGAAAATCATTATCTTATCTTAGCAATAGTCATGCTGGAGCAAACCCAGCAGTCCTTTAGGTCAATGTAATGTGAGCAACACAGGAAGCTTTAGAGGAAGGCAAAAATTCTTAATGCATCTGTTCATCTGTACAATGTTGAGACCTGAAGTTAATTAAGGGCATTTCTTTCCAGGCCTAGCCACAGAACAGCAGGGCCTCAGAGGGGCAGCCGCACTAAATATAACCTTCTAATTAAGATTCCCATGTATATTATTACACAGCTGCTGTTGCTGCCTTGACTTGGTAAAAGGTGTCTCCTCGTTAAGCATGGGGTGGACGAGTTGTCCTGAAAAAGCTGGTTGTCCTCCATCACCTTGGAGTTCTTATGCACTTGCAGTGTTACATCTTGATGGCTGTTCTTGGGCAATTCTCACATCTGAATTAACACCGGTATGAGTGTGTGTTTTTGTGTTAATGATCTTATAAATCACTGAGTGGTTAGGTACATGTCCCATGCAGATGTTAGCTGTCCAGATGACTTAATACTGTCTGAAGTACTGCAGAAGACTGACTGAGTCCTCAGAGCAGCTGTGTTGCAGCAGTAGTCTAGAGGGGCACCAAGGCCAGAAGCAAGCATCCTGTCCTACTACACTTGCCTTTAGTCACAGTTTGTCATGGTGCTGTGGTTTGTGTGAACTGAAGTGATAACTCACAGTCTGCTCAGCTGCTACGAGTATGTAGAGATCTGCCTCTGGGCTCCTGAGGACCCACCATATCCTACCACATGCTTAGGTGGAATGCCAACTGGCTGAAGAGACCCTCTTGGAAACCTCTGGCATCTCCATGAGCTTATCTTGCAGCCAGCTGAGCTCTGGGCTGCATTTGCTAAAGGAGCGCAGAGGTGTTCTTTAAAGCAAGCATGACATGGGGTTGCTGCTAGGCTGGAGAAGCATTGCAGCCACAGCCAGGCAAGCACTTGGAGGTGATCAGGGAAGGGCATAAAAATCTGTTTGTCTGCTCTCTGTTTAAAAGACTCTAAATTCCCTGCGGATGAGCCTGTCAAGTGAAGTGGCAAGCTTTACTAACTCAAAAAAAGTAACATGGTCCCCAGGTTTTGTTTCTGTTGGTAGTTTCTGAGCCACCTCATTAATGGAGTTGTGAACTGTAATACGAGGGATTGTACTGTGATTTCTAGCTTTCCTGTAGGGCCAAGTCATTAGGTTGGCTAGGGGAAGAAATCACAGAAAAAAAAGAAGGATCCATTCTCTAAATCCCTTCCAATAGTTGTCACAGTCCGTAACGGGAAATGTTAGGACAGAGACCCAAAGCTCTGCCCATAGAAAATCTCCAACAGGATGTGTTGCAAACCAGATCTGTAGTTATAAATTCACACAAGAAGTAGCTGGGGTCCCAGCTGGCATCAGAATCCAGTACAAGACCCCTGCCATCCAGGCCAGCCCTTTTTACAGTGCCTTATTCTAACTGTTTTGAGTCTTGCATCTTTTCTGCATTCTTAGAATTGCTCTTCTTAGAGGGGAGTGGTAGCTTTTGCTCCATAACTCTTATGAAAGCATGAATATTCTTTAAAAGCATACAAAAGCAAAAACAGAATAAAGCAGCGTCTTGTTTGGGAAGCCATCAATGCTTGAAGTTATTTACAAGATAGAAGAATGATGGAATTTGAGCCAAACCTATCGTCTTTTGAATTTCCAGGTAAGGAAATATGGCTATTCCCTTTGTTTTAAGCAATTAATAATCTGTATGAGGTTGCTTTTATTATTATTATTATTTTTAATCACTGAATGGCCATGCTCTTAGATGTTGCTGGCACAAGCTAGATGCCCCATCCTTGAAAGGCATACATTCATTATAGCTCAGTTGACAATGTATACCTTGGGATTTAAACGTGCAAGTTATTTTTACTCATTTGCCTTTGCATTTCTGGAGCAGCCTCCAAAAAGAAGGAGAGTAATGTGGTTTGCAATCTTTGTGCTGTGGCATGCACTGATGCTGGGGTTCTCATCAGTGAAACAGTCTGAATCTCTTGCTGCACTGCTGTACATTTGATACCTTTTACCAAGTCAAAACAGGCACAGGTCTTCCAGCCAGCCAAAATGGCACTGGGCTCTGGGTGTTAGGTTCCACTGTGATTAGTGATTACTGTCTAGGCTCCTTCCAGCGCAGATTGGTTATACCACTAGGTTAAACAAGCTGCCTACAGTTTCTCTTCTCTTTAGAGTGTGTGGGTCCTACTCTGCTGTGGCTACCCAGGACAGTCTTTATTTTTGCAGACATGCCCAGTAGTAGGGCTCTTCCTCTTGCGAGCCTCGGTTTCCACTGAGTTGTTTCAATTCCCTGGCTTATAACACAACCTACAAATCTGCAGGGATTCAGTCTGCCTTTTTGTTCTTTTTTTTTTTCATTTGAGTTTTAGATTGAAAGATTCTGGTCAGTTCCCAGTGATAATCCCCACCCCTCGTTTTCCTTTCTAG
Seq C2 exon
GAGACAAAAAATTACAGAAGGAAAAGTCAGAAAAGAATGCAGATAATCAAGAGGACACAAGGGCTCCACTCCACTTCACCACATTAAAGCAAGGGAAGAGCCCCTACAAACGCAGCTATGACGAGGGGGAGTCCCACCCCCAAACAAAGAAAAAAAAGATTGACCTCATCTTCAAAGATGTCCTGGAGGCCTCTTTGGAGTCTGCCAAATTTGAAGAGAAACAGTTAGCAACAAGTACACCGCTTTCCACAAGAGCAACATCTAAATACCAGGCAGAAGAGATCTTTGAGAGGTGCAGTAGTGCCATGCAGCATGGCTCCCTAAATCTCAGCAGAAACAGAAGCGAAGAGGAGTGGAAGGCCCCTCATGGTTCCTCTTTCAGTTCTGCCAAAGAAGTGGGAGTCCTTGAAGACGAGGAAGAAGAGCCTCTGTCTCTGAAAGCAGACAGCCCTACCGAGCTGTCACTGGCTTCTGCAGAAGGCAACTCCCATGAAATTCCTACCACCTCCTTCTGCCCCAATTGCATCCGGTTGAAGAAGAAAATCAGAGAGCTACAGGCTGAGTTAGACATGCTGAGATCTGGGAAGTTACCTGAGCCACCTGTGCTACCACCCCAGGTACCTGAGCTCCAAGAGTTCTCAGACCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008053:ENSGALT00000013067:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.705
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(41.8=64.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]