RnoINT0117012 @ rn6
Intron Retention
Gene
ENSRNOG00000008674 | Prdm11
Description
PR/SET domain 11 [Source:RGD Symbol;Acc:1597330]
Coordinates
chr3:81872524-81877930:-
Coord C1 exon
chr3:81877743-81877930
Coord A exon
chr3:81873136-81877742
Coord C2 exon
chr3:81872524-81873135
Length
4607 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACCCTGGTTTTCCTTCCTAGGAG
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCCTTCCAGCACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGTCTGCACAGCATGTCCCAGGAAACCATCCACCGCAACCTGGCCCGGG
Seq A exon
GTGAGTATGGGCAGGGGAAGGAGCGAGCATGCCCTCAGGGCCAGGGACATGCCCACAAGGCTAAATCCACAAGTCTAAGTCAGTCCTGATGGTGAAGGGACACACCCCAAAGCTAGGGTCACGCCTACAGGCCCAAGACCACGCCCACAGGGCTAAAGCCACGAAGGGCACACCCACTCTGAACCACAAAAGCTCAGAAAGCTGCTCTGGGAACCTTCCAAGCAAACCAATGAGGAATGCAGTATCCAGCAGTACAAAGAGCCAGGCCAGGACAGACTCAGCACAGTAAGCCAGCCGCCACCCCAGGGAATTCTTTTCTCTAGGAGGCCGTCCTGAGAGATCAGCAAATCCCAGCCAAAGATCAAATTAAATGAACACCAATCCCGTCACCCCAACTCTAACTGATGAAAAGACACTTCTCACTCAGTACCTCAATAGATACCTCCCGTGTGCTAGCTTGGTTTCCTTCACTTTGCCATGGGATCAAGGTAATGAGAACTGACCTGCCAAGATACTCTGCAAATCCGTGGAACAATGTGCTTACCACCATTGATGCAATCTCTACCTTGACCATCACCAAGTCCTTGGTCGTCAAATTCTAGTCTGATGATTTTTGTGGCATCAGCTCTATCACTGTACAAATGTCCAGACATTACAGAAATGCAGTGGCTTACCCAGGCTCATGACTGACGAGCCCAGGGCTAGCTTTCCAATTTGAGGCGTCTGAAGAGGATCTAAGTTTTATCTAACAGTGGCCACCAGACGAAGCCAGCCATAGCATGGTTGATCTTGTTCCCGGCAGCCCAAATGATACACAGCATGAAGGAATGGCTTCCAGAAGAAGGCTAGTGGACATGGGAAGATGGGCTTAGGTTGACAGACCCTAGCGGGTTCGCTGTCCATCCATGCTCCACTGGAATGACTCATTTGAAAGGAGCTTGGCTCACTCCCGGCCCCTGGCTCTCCACCTGTAGATGCCATTCTCAGCCTGGCCAGGGTAAACAGGTGTGCCCAGGTCTTTTCTGAGAGAGCCATCTTTGCACAGAGCTGCACATCCACACACCCAGGGTCCATTTGGTCCTCGGAGGCAGAGCCATGTCCAAGGTCTTCTACACCATCTTCTTAACTAACCTCTTCACTGGGGACAGCCTTGTTTAGAAGGTGAGCGGAGGAGATGAAAGCAGGTGACTCACTGAGGTGAAGCTGACTTGGAAGACAAAACGGAACAGGCCTTGGGGTGTCCGGAAGCTGTCTGGCTTGGTCAAAAGCATCTGGCAATTGCTGGAGAGCTGAGAGACCCTCGGATAAACACATCTCCTGTCTCCTTTGGAGCTGAGCTTGGGCATGCTTCTGTGATAAAGGGTGGCTACTGTTTGACCTCTTCCTGAAACTCCAAAAGGATTCAGCGGACCTCGGAACCTCCAGAAATGTTTGGTGAGCCTCCTTCACATCGATAAAAGCGGAAGTAAACGAATCACACTACCCAAAGAAGAAAACCAAGAGAGGTCACAGCTGCTGTGGCACCGATTTCGTCTCTGTCCCGCCATCTTGGATTCTTCTGGAACATGTCTTCCTGTGTCTTCTCCAAAGTACCTCAACCTGCATCATCCTCAGGAAGACCCGAGACCCAGAGACAGCTCAGAGAGAGGATAGAGTTTTGAGAAGTGAAAGCTCACAGGAGGCTTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACAAGCCTTGGAAGATACAAGAGAAGGCATCTATCCATGACCAGGCCGGATTGTAGGCTGCAGGAGGAAACCAGCAACCACAGTGGGCCCAGCCAGAACTGTGATGAAAGTGGTCCTTGAGAGTGACCATGAGTTTTGGCAGCTGATGGATGCCTGTTTGATGTTAGGTACAGAGTCCTGGTCCTTTCAGTGTGCCTTCGATGGCCTATCAGCCCTGTTCAGGAAGGTCCCCGTTGCCTGGTCACTTAAGGTATTAGAGATATATTAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTCTGGTGTGTTCATGTGTGTGTTTATGTATATATGTATGTGTATGTGTTCATATGCAGGTATATGCATGTATGAATCAAGTGTCATTCCTCAGGAATCACTTTGCTTTTGAGACAACTCTCCCTGACCTGGAACTTGCCAAATGTGCTGAGCTGTCCGGCCAGTGAACCTTAGGGAACATGTCTGGAACATGTCTTCCTGTGTCTTCTCCGCCCCCCCCCCACCTTCCCAGCACTGGAATTACAAGTACTGGTCACTACACATGGTGGGTTTTTTGTTGGGTTTTTTTTTTTGTTGGTTTTTTGTTTGTTTGTTTAAAAACATGAATTCTAGACATTAAACTCAAGTCCTCATACTTGTAAAACAAACATTTTGCCAGCTGAGCTATCTCCCAATCCCCACCCCCTTGTGAGACACAGTCTTATGTAACCCTGGCTGGCTTTGAACTCCAGAACCTCCCACCTCTGCCTCCCAAGCACTGGGATCACTGACGGACACCACTTCGTCTGGCTTTTAGAGAAGGGCAGCTTCATGATCAGAGGCTGCTTAACCAGATCGTATTTATTGTCGTTTTTATGGAAGAGTGTTGTTTGGAGCCCAGAACTTCTGGAGAGAATGTCATTTATCCCTTTGTGGTTAATCTTTGAAGGAGAGGAATCAACATATTTAGGTGATCTGTGTGGGGATGTTCTAAATTTTTCTTTGATTTTATCCACAAATGTCAAGGAGGATTTGGAATAGAATTCATGGTGACCTTCATTAAAGGTCATCTGTGAACTATGGATTTTATACGGAATCCATAAGTTCAGAAGTCTGTCCTGCTCATCCTAGAAAACATGGGTGACTTTATCTTTGATTACAGAGACAATGAGAGTCTTCTGTGGTTATCACTCTGACCTGCCAGCATTCTCAGCGGTCTGATGTCTTGAGGGGTCCATGAGAAGGTGAAAGGGCACCCTTGCTTTTCACAGATTCAGTGTGGTGAGCACCTCACCTGCTCCCGTGACACAAACACATTGCATTACATTTTTAAAATTTAATTTTATTTATGTACTTTTATGTATATGTGTGTTTTGTCTACATACATGTCTCTGTACCACGTGTGTGTCTGCTGCCTTTTTAGGTGTCTTCTGGCTACCCTGGGCCTAGAGTCTGTCACAGGGTGTTGTGAGCTGCCATGTGGGTTCTGGGAATTGAACCCAGATCTTTTGGGAGGGCAGCCAGCACTTCTAATCTCTAAGGCATCTCTCCAGCTCACAAGATGCATTTTTAAAGGGTTCCTTCTCAGCATTGAGCTTCCTGTGGTTCTACTGGTAGAGACACAGGGGCTTCTGGAAGCTGCCTGAGTGCCGGGAGCCCAGGATGAGGTTATTACTTAAGCAGCTCCTGTGAGGACAAAATAGGGACCTGGGTGGCTTAAACCCTGCTGTGCTGTTTTCTGTGGGAGCCTGGAGACATGAGGAAAGAAAGCATGGGGGGAGCCAAGGCATGGAGCTTCCTGACCTTCACCCAGGGCCTATAAAAACCTCCCACAGACGCCTGGACACTGAATGAAGGCTCAAGGCTGCAGCGCCAGGACCCTGACCCCGACCAATCCAGGAGGCCTTTGAGATTGCCCAACCCCACAGGCTGCTGGCAGAACCTTTCTGAAAGCTGAGAGACAGCTCTCCTCAGCATGTCTCCCCTGGGCATACCAGCACTTCTGTAGCTGTCTGTGCTATTCCACTGGCCTCGTTAACGAATCTAAAATAGCTTACTATTGGCGATCTCACCAACACTCCAAGGTAATTAAAAATGAAGAAGGAAAAAGAGGCATCTTTTGTTGGGTGAGGAAACAGCTGTTCTTAAGGATATTTTGGGTCTCTCTGCCACCTTGCCCTTATCTTGAGGGAGGCTGATACATTGACATGTTTAGGAATCTTTCCCAAGGCACCCTGCTGCTTTTCAGCCTTAGCCATGACTGAGAACCGCGGGACTTTCAACCATTCTTCTTTGTGTATTTCCTTTAGGCAGCTGGGAGAATAGAGAGGCAGTAACTGTAGGGTGGCTATTCCCCTCGGCTCTCCAGACCCACAAGCATGGAAGAAGGCAGGACCTATGCTCTCCCCATGCCGTCTACTGAGGCACTGCAACCACTGTGTAGTTTTAGGGCCAGAGAACAGCTTGACCCATGGTGGGCGGATATCCACTCAGTTCTGAAGGTTGTTGCATTGGTCAGATAGGGTGAGATGCTGTCTTCTGGGGTCAAGCGCCATCCCCTTAGGATGGTAACTCCTTTTTGTTCTCCCCTTCAGACCTACGCCAACTCACAAGTGAAGCATTTATCCAGGTGAGGCGTCTTCAAAGCTGCCTTTTGGTAAAGGCCCCGTGACTTCAGTCCCCGTGATCTGTTCTTCTCTCCATTTGGGTCTCACCTGACCCAGATGGTCAGCACCAGGGGGATGTCAGGCAGTTCCCAAGCAGAAGGCCCATTCTGTTCCCTGTTAACCTCTCCATTTGGGGCTTTTCCCCACGTCCTCACACCCTGGTTTTCCTTCCTAG
Seq C2 exon
GAGAGAAGAGATTGCAGAGAGAGAAGGCTGAGCAAGCCCTGGATAACCCAGAAGACCTAAGGGGTCCCTCCCATTTCCCTGTGTTGAAGCAGGGCAGAAGTCCTTACAAGCGCAGCTTTGATGAGGGGGACCTCCACCCTCAGGCCAAGAAGAAGAAAATAGACCTCATCTTCAAGGACGTCCTGGAAGCCTCACTGGAGTCTGCTAACGCGGAAGGCCGCCAGCTGGCCCTGAGCACCTCCCTGGTCATCCGGAAAGTCCCCAAGTACCAGGACGATGACTATGGTAGAGCTGCCCTGACACAAGGCATCTGCAGGACCCCAGGGGAAGGGGACTGGAAGGTCCCTCAAAAGGTGGCCAAGGAGCTAGGCCCACTGGAAGATGAAGAGGAGGAGCATACGTCGTTCAAGGCCGACAGCCCCGCTGAGGCCTCTCTGGCATCTGACCCCCACGAGCTGCCCACCACCTCCTTTTGCCCTAACTGCATCCGACTGAAAAAGAAAGTGCGGGAATTGCAGGCGGAGCTAGATATGCTTAAGTCTGGAAAGGTGCCTGAGCCTCCCATTCTGCCACAGCAGGTACTGGAGCTCCCAGAGTTCTCAGATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008674:ENSRNOT00000066526:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=NA C2=0.541
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(43.6=64.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]