HsaINT0131368 @ hg19
Intron Retention
Gene
ENSG00000019485 | PRDM11
Description
PR domain containing 11 [Source:HGNC Symbol;Acc:13996]
Coordinates
chr11:45241121-45246903:+
Coord C1 exon
chr11:45241121-45241308
Coord A exon
chr11:45241309-45245767
Coord C2 exon
chr11:45245768-45246903
Length
4459 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCCTGGTTTTCCTTCCTAGGAG
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTACGTGGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCGTTCCAGCACAGTGAGCGCATCTACTTCCGGGCGTGCAGGGACATCCGGCCTGGGGAGTGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCACAGCATGTCCCAGGAAACCATTCACCGCAACCTGGCCAGAG
Seq A exon
GTGAGTGCCATGCTCCACATGAGCTGCGCCCACCTCTGAGCCCCAGGGGAGGCCTGGATAGCTTGTTTTGGAGCTTCCTGAGAAATACGGTTCCCAGCAATGGGAAGACCCAGAGTGATTCGGGGGAACAGATGGTTGAGGTCTGAGCAGCAGCTCTGGGCCAAGCAGGGGCCACCCCAGCATGTTATCGACCCCTAGAAATGGTCTCAGAAATCCTTACCACACACATTTCAGAGTATTCATGAGAGAGACGCCCCCAAAACCGAGCAAATATGTTTAATCAAAATGTACCCTATTTCCCCAACTCCAGTTGATGAAAAGATGTTACAAACTGCCACTGCCTCAATAATGATCGTAATAATAGGTAACATTTACTAAATACTCAATATGTGAAATACTGACAACAGTCCAAGGACCCCACTCTACCACCGTCAGAGGCCTGTTGGGTATCTGGGAACCCCTGTGGTTAAAAGTTTGTGAAGAGTAGAAGAAATGACCTTTCATTTTTTCAGTTACCTGCAATATCTGGTGTTGATATATTTTCCATAGCCTGTGAGCAGATTTTCTGCATGTTCCCATGTAATTATCATAGCAGCCATCCCTACCCTGTCAGTGCACCCTGAGAAGTAGATGGAGTCATGGACATGTGGCATTTAGGACAATGCCCACCTCCATCATCAGAAGTCCTCAGCTATAAACTTTTAATACTCATGATCCCACATGCATTCTTTTACCCATCTTACAGATGTGCAAACCGAATATCAAATGAATACAGTGATTCATCCAGGGCCACCTGGCTAGGAAGGACAGAACTAGGTTTCTAATCCATATTGGTCTGACTTCAAGGTCTAAGTTCTGACCTGCAATGTTACCTGATGTCCCAGACAAAACCAGTCCCCTCCTGGGTTCCTCCTGGTGTCTGTACTGCAGTCCTAATGAGATGAGGTGAAAAAACAATCTCTATCAAAAGAAGAAGGTTGGCAGGAGGTGGGATGGTGACTTAGGTGTGGGAAGCCGGGTGGGTTCGGTGTCCATCCAGAAGCAGTTTTAACTACTCTCAGCCCCTAGTCCTTTACCCTTTTATTCCATCCTCATCCTGACCAGTGTAGACTGGTGAGTCCAGGCCCTTCTTTCAAGGGTGTTTTTTTTGTTTGTTTGTTTGTTTTTTTCCCCACTAAAACCACGCATCCAAACACCTAGAGTCTATCTGGTGCCAGGAACCAAGGCTGTTCCCAAGCCTCACCATATCGTGTTCCTGACCAACTTACTAATTGGAAATAAATCTTCACTTGGAATATGAGGGGAGAAGATGAAAAGGGGGTGGGAGTGACTTATTCAAATTAAGCTATCTTTAAAAGCAAAACAGAGCAAAGCAAATTGTGGACATTGAGTGCACAGCTGCTGCCTGACTTGGTAAAAGGTATCTGGAGATGATGGGCAGTAAAAGGAGACCCCATAAACATACTCATTTCTTGTCTTCTTTGGATCTCAGGGTTTGGCACATGTTGGTTTCACTTGGCAAGGTGTGCTTCCATGATGAGGCTGCAGTGGTTTCCATGTGACCTCTGGAGATGCCTCATGTAAAAGTGCCTGATACATAGTAGGGACTCAATAAGTCTTTGTTGAATGGATAAAAGAAGAAATGAATGAAGACAGCCAAGAAGCTTTCCAAAGAATCATACCACTAGAAGAAAAGAAAACCCAGAGAAATCATATCTGAGAACACAGATTTCATCCCTTGGTCATAACCTTCTTGCATTCTTCTGGATTTGTGATGTCCTTTTCTTCCCCTCAGTGGTCTTCTCCAGAGCACCTGAAGCTGCATCATCCTCCATGAGCCCCAAGACCACAGGGGATTGCTCAGAGAAGGGTGTGAGCTTTCTGGAGTGGTTCAAAGGAGGCGTGTCAGACAGACTTGAAAGGAGATACACCGAGACATATGAAGATACAGGAGGGAAGAGGGTCTATTCCTGGTCAGGCTGAGCAGTAAGAAATAGGAAGGAAATTGAAAGTCACAGTGGGGCAGTTTCACAGCTGTGGGTGATCCTGAAGCCCTTGGGAATGGTCATGGAGCTCAGTGGCTTTTAAATGTGTGCCTCTATAGCCTGTAGCTTCAGCGGACTCTGGTTAGTGGTGTCCCAGATGGGTGTGCCATTGCTGCTCTGAAAGGGAGATCCCCTATGCCCAATCACTCTTGGTCTTATATAGAAGGAGGTTTCTTTGTAATTGGAGGTAGGCACCCTGATGGAGTCCAGAGCATGAATTATTAGTTCTTATTAAGTAGGGATATTGGTTGTTGCCAGAAGTCTTCCTGAAGAGAGTGTAAACTATTCCTTTGTGGTTACCTTTTAAGAATAGATTGCATCTAAAGCTCGCATTCAAACAATTTATGTTATTTGACCTACTTTGATTCACTAATTTACTTTGAGGTTTTCTTTGTTTTTGTTTTCCATGTTGTATGGAGGCTTTGGAACCAATTTCATGATGCTTAAAGGTCTCTTTTGGCCTGTAGATTTTTCTGAAAGCCTTAAGTCCACAAAGATCATACTAAGAAATTTGAACAACGTTGTTTTCAAACAATGACGAGGAATCTCTGGTGATTTCTAGGCTTGATTTCCCGATGTCCTCAGTTGTTTGCTGCCTGATTGTCCCATGAGGAAAGGAAAATGTGGCTCTTGATTTTTAGAGATTTTCAATGGGCAAGTGCTGCATCTGATCTGTAAGACATACAGGTGGCATTTTCAAGTTATCTCCATCTCTCCCCTTTCTGTAGCTCAGCTGATATAGAAGTGCAGGCTGTGGGGAGCTGCCTGGGTTCCAGAAGCCTTGGAGATAAAGTTGTTCCTTAGGTATTCATGTGAGGACAGAAAAGGTGCATCCTGAATAGATAACTCCCTTTTGTGCTGTAACCTAAAGGAAACCTGAAGTCAAACATGGGGCAGGGCACAGCACCCATACCAGCTATGGGAAACCAGACGTGGAACATCTGGACTGCTTATTGGCAAACCCTTGGCCTTCAATCAGAAGTCTTTTGCAAATGGAGCCATCAGAAGCCTAAGTACGTTTTAGTTCAAGTCATTGTTCAGCGGCACATCACCTAGGGCCCCTGCACCTGGTCTAGGAAACCTTTGAGATTTCTGAGTTCCATAGGCTACTTTCAGGACCCTCTAAGGGCTGAAGAGATTCCTCTGCCTTTTTAGCATCTCTCACCAGCAAGCATCAGCACTTCTGTGGCAGTTTATGAAACTATGTTGGTAATTTTTAAAGAATCAGGCTAGCTGGGTGCCATGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGTGGGCAGATGGCTTGAGCCTAGGAGTTTGAGACCAGCCTGGGCAACATGGCGAAACCCTATCTCCACAAAAAGTACAAAAATTAGGGTGTGATGGCTTGTGTCTGTAGTCCCAGCTACTTGGGAGGCTGAAGTGGGGGGATCACTTGAGCCTGGAAGGTGGAGGCTGCGTGAGCACCACTGCACTTCAGCCTGGACAACAGAGTGGGTCTCTGTCTCAAAAAATAAAAATTAAAAACAAGGAATCAGTCTAAAATAATTTATGGTTCAGGAGCTCACCAAAGTCTTTGAAACAATTGAAAGTAATTCAAAGTGAATTGAGGTAATTCACATGATAGAAAGAAATAGGCAAGGAAACGTCCTTTGAATTGCCAAGTGAGGAGACATGGCTATATTTCCTGACTGCTTTGGGTCATTATGGCTACCTTGTCCTTTATCTTGTCGGAGGCTGCCATGTTGGAGCCCTCAGCGCCATAGGTCTCCTTGTCTTCCCCTTTCTTCTGCCCTTAGTCGTCAGTGAGAACAACAGAAGTTCAGATCATGCTTTCTCACATGTTCCTAGTCTGCTGATTGCTGGGAGAATTAGAAAGGACAGTTGCCATAGGATGGACTTTGCCTTAAGTAGGCTGTCTCCAGAGCAACGAAGGAGGAGGAAGGAGTGAGGCCTATGGTGTTTCATGTGTACCTTTTACCAAGTCGAAGCAGCCATCTTGTCATTGCTAGGGCTGAGGGGAAGCTGCAAAGGTTGGGGGAGTTGATACTCACTTGGCTCTGAGGTATGTTCCCACCACCCAGTGTGATTAAGTGGGATGTTGTTTTCTAGGGTCATAGGAAAGAATGTTCAATTACTCTCCCTTATAGATTTCTCTTAACTTATAACCGTAGAGCTTGTAGACATGAGGCTTCTTGGAAACTGTCTCTTTCTAAAAGGTCTTTCCACCGTTCAGGTCCTATGAGTCTAGCTCTGATGGACCACTGAGTGATTCGTATCTCCCCTTTGCAACACTTGCCCCAAAAGCCCAGATCTAGAGGGATGTGTCAGGTGACCTAACAGGAGGCCTGCTTTGTTTTCTGTTGGTTTCTCCAATTTGGGGGTTTTCCCCATTTCCTTACACCCTGGTTTTCCTTCCTAG
Seq C2 exon
GAGAGAAGAGGTTGCAGAGGGAGAAGTCTGAGCAGGTTCTGGATAACCCAGAAGACCTGAGGGGTCCCATTCATCTCTCTGTGCTGAGACAGGGCAAAAGTCCCTACAAGCGTGGCTTTGATGAGGGGGATGTACACCCCCAAGCTAAGAAGAAGAAAATTGACCTGATTTTCAAGGATGTTCTGGAGGCCTCACTGGAATCTGCGAAGGTGGAAGCCCACCAGTTGGCCCTGAGCACCTCACTGGTCATCAGGAAAGTCCCCAAATACCAGGATGACGCCTACAGTCAGTGTGCAACAACAATGACCCATGGTGTGCAGAATATAGGCCAGACCCAGGGGGAGGGGGACTGGAAGGTCCCCCAGGGGGTCTCCAAGGAGCCAGGCCAATTGGAGGATGAAGAAGAGGAGCCTTCATCATTCAAGGCCGACAGTCCTGCCGAGGCCTCCCTTGCATCTGACCCTCATGAACTTCCCACCACCTCTTTTTGCCCTAACTGTATTCGCCTAAAGAAGAAGGTTCGGGAGCTCCAGGCAGAATTAGACATGCTTAAGTCTGGGAAACTTCCTGAGCCCCCCGTATTGCCACCACAGGTACTGGAGCTCCCAGAGTTCTCGGACCCTGCAGGTAAGTTGGTTTGGATGAGATTATTGTCGGAGGGCAGAGTACGCAGTGGGCTGTGTGGAGGGTAGCCTAAAGCTCTCTGTGGAAACCACCTTCCGGGAGACCTGAGGAGTGTAACGTGGAGGCGGCTACCTCCGTGGGTGGGAGCCCAGGTCCTCAGTGTCTCTGGCAGACCCATCGGCAGCTCTGCCAGGTGCTCCATGTGTTGCCCTTGTATCCTCCTTGTCAATAAAGGAAGTTCCGCTGCAGAAGGGGTGTGTGCTGTGTTCTTGACCCGTTGCCTTTCTCTGGTACTGGTGTCTTACCCCAAAGCCCAATTTCTAAACCCAGTCTTTCTCTGTCCCCAGTCTCAAGCAGGGTGTCCCACTGGAGAGATCTCTTGGCTTCCCTAACTTAGTCCAGGAACACAGCCTTGTTCTTCTCTTCCTGAATCTCTGTCCTGCCACACATGGTCCCAGTTCCCTAGCCTGGAGTTCTAGAAGGATGGAGAGTGAGGGGATCCAGGCCATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019485-PRDM11:NM_020229:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.478
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(42.7=64.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)