Special

HsaINT0131368 @ hg38

Intron Retention

Gene
ENSG00000019485 | PRDM11
Description
PR/SET domain 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr11:45219570-45224908:+
Coord C1 exon
chr11:45219570-45219757
Coord A exon
chr11:45219758-45224216
Coord C2 exon
chr11:45224217-45224908
Length
4459 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCCTGGTTTTCCTTCCTAGGAG
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTACGTGGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCGTTCCAGCACAGTGAGCGCATCTACTTCCGGGCGTGCAGGGACATCCGGCCTGGGGAGTGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCACAGCATGTCCCAGGAAACCATTCACCGCAACCTGGCCAGAG
Seq A exon
GTGAGTGCCATGCTCCACATGAGCTGCGCCCACCTCTGAGCCCCAGGGGAGGCCTGGATAGCTTGTTTTGGAGCTTCCTGAGAAATACGGTTCCCAGCAATGGGAAGACCCAGAGTGATTCGGGGGAACAGATGGTTGAGGTCTGAGCAGCAGCTCTGGGCCAAGCAGGGGCCACCCCAGCATGTTATCGACCCCTAGAAATGGTCTCAGAAATCCTTACCACACACATTTCAGAGTATTCATGAGAGAGACGCCCCCAAAACCGAGCAAATATGTTTAATCAAAATGTACCCTATTTCCCCAACTCCAGTTGATGAAAAGATGTTACAAACTGCCACTGCCTCAATAATGATCGTAATAATAGGTAACATTTACTAAATACTCAATATGTGAAATACTGACAACAGTCCAAGGACCCCACTCTACCACCGTCAGAGGCCTGTTGGGTATCTGGGAACCCCTGTGGTTAAAAGTTTGTGAAGAGTAGAAGAAATGACCTTTCATTTTTTCAGTTACCTGCAATATCTGGTGTTGATATATTTTCCATAGCCTGTGAGCAGATTTTCTGCATGTTCCCATGTAATTATCATAGCAGCCATCCCTACCCTGTCAGTGCACCCTGAGAAGTAGATGGAGTCATGGACATGTGGCATTTAGGACAATGCCCACCTCCATCATCAGAAGTCCTCAGCTATAAACTTTTAATACTCATGATCCCACATGCATTCTTTTACCCATCTTACAGATGTGCAAACCGAATATCAAATGAATACAGTGATTCATCCAGGGCCACCTGGCTAGGAAGGACAGAACTAGGTTTCTAATCCATATTGGTCTGACTTCAAGGTCTAAGTTCTGACCTGCAATGTTACCTGATGTCCCAGACAAAACCAGTCCCCTCCTGGGTTCCTCCTGGTGTCTGTACTGCAGTCCTAATGAGATGAGGTGAAAAAACAATCTCTATCAAAAGAAGAAGGTTGGCAGGAGGTGGGATGGTGACTTAGGTGTGGGAAGCCGGGTGGGTTCGGTGTCCATCCAGAAGCAGTTTTAACTACTCTCAGCCCCTAGTCCTTTACCCTTTTATTCCATCCTCATCCTGACCAGTGTAGACTGGTGAGTCCAGGCCCTTCTTTCAAGGGTGTTTTTTTTGTTTGTTTGTTTGTTTTTTTCCCCACTAAAACCACGCATCCAAACACCTAGAGTCTATCTGGTGCCAGGAACCAAGGCTGTTCCCAAGCCTCACCATATCGTGTTCCTGACCAACTTACTAATTGGAAATAAATCTTCACTTGGAATATGAGGGGAGAAGATGAAAAGGGGGTGGGAGTGACTTATTCAAATTAAGCTATCTTTAAAAGCAAAACAGAGCAAAGCAAATTGTGGACATTGAGTGCACAGCTGCTGCCTGACTTGGTAAAAGGTATCTGGAGATGATGGGCAGTAAAAGGAGACCCCATAAACATACTCATTTCTTGTCTTCTTTGGATCTCAGGGTTTGGCACATGTTGGTTTCACTTGGCAAGGTGTGCTTCCATGATGAGGCTGCAGTGGTTTCCATGTGACCTCTGGAGATGCCTCATGTAAAAGTGCCTGATACATAGTAGGGACTCAATAAGTCTTTGTTGAATGGATAAAAGAAGAAATGAATGAAGACAGCCAAGAAGCTTTCCAAAGAATCATACCACTAGAAGAAAAGAAAACCCAGAGAAATCATATCTGAGAACACAGATTTCATCCCTTGGTCATAACCTTCTTGCATTCTTCTGGATTTGTGATGTCCTTTTCTTCCCCTCAGTGGTCTTCTCCAGAGCACCTGAAGCTGCATCATCCTCCATGAGCCCCAAGACCACAGGGGATTGCTCAGAGAAGGGTGTGAGCTTTCTGGAGTGGTTCAAAGGAGGCGTGTCAGACAGACTTGAAAGGAGATACACCGAGACATATGAAGATACAGGAGGGAAGAGGGTCTATTCCTGGTCAGGCTGAGCAGTAAGAAATAGGAAGGAAATTGAAAGTCACAGTGGGGCAGTTTCACAGCTGTGGGTGATCCTGAAGCCCTTGGGAATGGTCATGGAGCTCAGTGGCTTTTAAATGTGTGCCTCTATAGCCTGTAGCTTCAGCGGACTCTGGTTAGTGGTGTCCCAGATGGGTGTGCCATTGCTGCTCTGAAAGGGAGATCCCCTATGCCCAATCACTCTTGGTCTTATATAGAAGGAGGTTTCTTTGTAATTGGAGGTAGGCACCCTGATGGAGTCCAGAGCATGAATTATTAGTTCTTATTAAGTAGGGATATTGGTTGTTGCCAGAAGTCTTCCTGAAGAGAGTGTAAACTATTCCTTTGTGGTTACCTTTTAAGAATAGATTGCATCTAAAGCTCGCATTCAAACAATTTATGTTATTTGACCTACTTTGATTCACTAATTTACTTTGAGGTTTTCTTTGTTTTTGTTTTCCATGTTGTATGGAGGCTTTGGAACCAATTTCATGATGCTTAAAGGTCTCTTTTGGCCTGTAGATTTTTCTGAAAGCCTTAAGTCCACAAAGATCATACTAAGAAATTTGAACAACGTTGTTTTCAAACAATGACGAGGAATCTCTGGTGATTTCTAGGCTTGATTTCCCGATGTCCTCAGTTGTTTGCTGCCTGATTGTCCCATGAGGAAAGGAAAATGTGGCTCTTGATTTTTAGAGATTTTCAATGGGCAAGTGCTGCATCTGATCTGTAAGACATACAGGTGGCATTTTCAAGTTATCTCCATCTCTCCCCTTTCTGTAGCTCAGCTGATATAGAAGTGCAGGCTGTGGGGAGCTGCCTGGGTTCCAGAAGCCTTGGAGATAAAGTTGTTCCTTAGGTATTCATGTGAGGACAGAAAAGGTGCATCCTGAATAGATAACTCCCTTTTGTGCTGTAACCTAAAGGAAACCTGAAGTCAAACATGGGGCAGGGCACAGCACCCATACCAGCTATGGGAAACCAGACGTGGAACATCTGGACTGCTTATTGGCAAACCCTTGGCCTTCAATCAGAAGTCTTTTGCAAATGGAGCCATCAGAAGCCTAAGTACGTTTTAGTTCAAGTCATTGTTCAGCGGCACATCACCTAGGGCCCCTGCACCTGGTCTAGGAAACCTTTGAGATTTCTGAGTTCCATAGGCTACTTTCAGGACCCTCTAAGGGCTGAAGAGATTCCTCTGCCTTTTTAGCATCTCTCACCAGCAAGCATCAGCACTTCTGTGGCAGTTTATGAAACTATGTTGGTAATTTTTAAAGAATCAGGCTAGCTGGGTGCCATGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGTGGGCAGATGGCTTGAGCCTAGGAGTTTGAGACCAGCCTGGGCAACATGGCGAAACCCTATCTCCACAAAAAGTACAAAAATTAGGGTGTGATGGCTTGTGTCTGTAGTCCCAGCTACTTGGGAGGCTGAAGTGGGGGGATCACTTGAGCCTGGAAGGTGGAGGCTGCGTGAGCACCACTGCACTTCAGCCTGGACAACAGAGTGGGTCTCTGTCTCAAAAAATAAAAATTAAAAACAAGGAATCAGTCTAAAATAATTTATGGTTCAGGAGCTCACCAAAGTCTTTGAAACAATTGAAAGTAATTCAAAGTGAATTGAGGTAATTCACATGATAGAAAGAAATAGGCAAGGAAACGTCCTTTGAATTGCCAAGTGAGGAGACATGGCTATATTTCCTGACTGCTTTGGGTCATTATGGCTACCTTGTCCTTTATCTTGTCGGAGGCTGCCATGTTGGAGCCCTCAGCGCCATAGGTCTCCTTGTCTTCCCCTTTCTTCTGCCCTTAGTCGTCAGTGAGAACAACAGAAGTTCAGATCATGCTTTCTCACATGTTCCTAGTCTGCTGATTGCTGGGAGAATTAGAAAGGACAGTTGCCATAGGATGGACTTTGCCTTAAGTAGGCTGTCTCCAGAGCAACGAAGGAGGAGGAAGGAGTGAGGCCTATGGTGTTTCATGTGTACCTTTTACCAAGTCGAAGCAGCCATCTTGTCATTGCTAGGGCTGAGGGGAAGCTGCAAAGGTTGGGGGAGTTGATACTCACTTGGCTCTGAGGTATGTTCCCACCACCCAGTGTGATTAAGTGGGATGTTGTTTTCTAGGGTCATAGGAAAGAATGTTCAATTACTCTCCCTTATAGATTTCTCTTAACTTATAACCGTAGAGCTTGTAGACATGAGGCTTCTTGGAAACTGTCTCTTTCTAAAAGGTCTTTCCACCGTTCAGGTCCTATGAGTCTAGCTCTGATGGACCACTGAGTGATTCGTATCTCCCCTTTGCAACACTTGCCCCAAAAGCCCAGATCTAGAGGGATGTGTCAGGTGACCTAACAGGAGGCCTGCTTTGTTTTCTGTTGGTTTCTCCAATTTGGGGGTTTTCCCCATTTCCTTACACCCTGGTTTTCCTTCCTAG
Seq C2 exon
GAGAGAAGAGGTTGCAGAGGGAGAAGTCTGAGCAGGTTCTGGATAACCCAGAAGACCTGAGGGGTCCCATTCATCTCTCTGTGCTGAGACAGGGCAAAAGTCCCTACAAGCGTGGCTTTGATGAGGGGGATGTACACCCCCAAGCTAAGAAGAAGAAAATTGACCTGATTTTCAAGGATGTTCTGGAGGCCTCACTGGAATCTGCGAAGGTGGAAGCCCACCAGTTGGCCCTGAGCACCTCACTGGTCATCAGGAAAGTCCCCAAATACCAGGATGACGCCTACAGTCAGTGTGCAACAACAATGACCCATGGTGTGCAGAATATAGGCCAGACCCAGGGGGAGGGGGACTGGAAGGTCCCCCAGGGGGTCTCCAAGGAGCCAGGCCAATTGGAGGATGAAGAAGAGGAGCCTTCATCATTCAAGGCCGACAGTCCTGCCGAGGCCTCCCTTGCATCTGACCCTCATGAACTTCCCACCACCTCTTTTTGCCCTAACTGTATTCGCCTAAAGAAGAAGGTTCGGGAGCTCCAGGCAGAATTAGACATGCTTAAGTCTGGGAAACTTCCTGAGCCCCCCGTATTGCCACCACAGGTACTGGAGCTCCCAGAGTTCTCGGACCCTGCAGGTAAGTTGGTTTGGATGAGATTATTGTCGGAGGGCAGAGTACGCAGTGGGCTGTGTGGAGGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019485:ENST00000530656:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.094 A=NA C2=0.497
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development