HsaINT0131368 @ hg38
Intron Retention
Gene
ENSG00000019485 | PRDM11
Description
PR/SET domain 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr11:45219570-45224908:+
Coord C1 exon
chr11:45219570-45219757
Coord A exon
chr11:45219758-45224216
Coord C2 exon
chr11:45224217-45224908
Length
4459 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ACCCTGGTTTTCCTTCCTAGGAG
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTACGTGGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCGTTCCAGCACAGTGAGCGCATCTACTTCCGGGCGTGCAGGGACATCCGGCCTGGGGAGTGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCACAGCATGTCCCAGGAAACCATTCACCGCAACCTGGCCAGAG
Seq A exon
GTGAGTGCCATGCTCCACATGAGCTGCGCCCACCTCTGAGCCCCAGGGGAGGCCTGGATAGCTTGTTTTGGAGCTTCCTGAGAAATACGGTTCCCAGCAATGGGAAGACCCAGAGTGATTCGGGGGAACAGATGGTTGAGGTCTGAGCAGCAGCTCTGGGCCAAGCAGGGGCCACCCCAGCATGTTATCGACCCCTAGAAATGGTCTCAGAAATCCTTACCACACACATTTCAGAGTATTCATGAGAGAGACGCCCCCAAAACCGAGCAAATATGTTTAATCAAAATGTACCCTATTTCCCCAACTCCAGTTGATGAAAAGATGTTACAAACTGCCACTGCCTCAATAATGATCGTAATAATAGGTAACATTTACTAAATACTCAATATGTGAAATACTGACAACAGTCCAAGGACCCCACTCTACCACCGTCAGAGGCCTGTTGGGTATCTGGGAACCCCTGTGGTTAAAAGTTTGTGAAGAGTAGAAGAAATGACCTTTCATTTTTTCAGTTACCTGCAATATCTGGTGTTGATATATTTTCCATAGCCTGTGAGCAGATTTTCTGCATGTTCCCATGTAATTATCATAGCAGCCATCCCTACCCTGTCAGTGCACCCTGAGAAGTAGATGGAGTCATGGACATGTGGCATTTAGGACAATGCCCACCTCCATCATCAGAAGTCCTCAGCTATAAACTTTTAATACTCATGATCCCACATGCATTCTTTTACCCATCTTACAGATGTGCAAACCGAATATCAAATGAATACAGTGATTCATCCAGGGCCACCTGGCTAGGAAGGACAGAACTAGGTTTCTAATCCATATTGGTCTGACTTCAAGGTCTAAGTTCTGACCTGCAATGTTACCTGATGTCCCAGACAAAACCAGTCCCCTCCTGGGTTCCTCCTGGTGTCTGTACTGCAGTCCTAATGAGATGAGGTGAAAAAACAATCTCTATCAAAAGAAGAAGGTTGGCAGGAGGTGGGATGGTGACTTAGGTGTGGGAAGCCGGGTGGGTTCGGTGTCCATCCAGAAGCAGTTTTAACTACTCTCAGCCCCTAGTCCTTTACCCTTTTATTCCATCCTCATCCTGACCAGTGTAGACTGGTGAGTCCAGGCCCTTCTTTCAAGGGTGTTTTTTTTGTTTGTTTGTTTGTTTTTTTCCCCACTAAAACCACGCATCCAAACACCTAGAGTCTATCTGGTGCCAGGAACCAAGGCTGTTCCCAAGCCTCACCATATCGTGTTCCTGACCAACTTACTAATTGGAAATAAATCTTCACTTGGAATATGAGGGGAGAAGATGAAAAGGGGGTGGGAGTGACTTATTCAAATTAAGCTATCTTTAAAAGCAAAACAGAGCAAAGCAAATTGTGGACATTGAGTGCACAGCTGCTGCCTGACTTGGTAAAAGGTATCTGGAGATGATGGGCAGTAAAAGGAGACCCCATAAACATACTCATTTCTTGTCTTCTTTGGATCTCAGGGTTTGGCACATGTTGGTTTCACTTGGCAAGGTGTGCTTCCATGATGAGGCTGCAGTGGTTTCCATGTGACCTCTGGAGATGCCTCATGTAAAAGTGCCTGATACATAGTAGGGACTCAATAAGTCTTTGTTGAATGGATAAAAGAAGAAATGAATGAAGACAGCCAAGAAGCTTTCCAAAGAATCATACCACTAGAAGAAAAGAAAACCCAGAGAAATCATATCTGAGAACACAGATTTCATCCCTTGGTCATAACCTTCTTGCATTCTTCTGGATTTGTGATGTCCTTTTCTTCCCCTCAGTGGTCTTCTCCAGAGCACCTGAAGCTGCATCATCCTCCATGAGCCCCAAGACCACAGGGGATTGCTCAGAGAAGGGTGTGAGCTTTCTGGAGTGGTTCAAAGGAGGCGTGTCAGACAGACTTGAAAGGAGATACACCGAGACATATGAAGATACAGGAGGGAAGAGGGTCTATTCCTGGTCAGGCTGAGCAGTAAGAAATAGGAAGGAAATTGAAAGTCACAGTGGGGCAGTTTCACAGCTGTGGGTGATCCTGAAGCCCTTGGGAATGGTCATGGAGCTCAGTGGCTTTTAAATGTGTGCCTCTATAGCCTGTAGCTTCAGCGGACTCTGGTTAGTGGTGTCCCAGATGGGTGTGCCATTGCTGCTCTGAAAGGGAGATCCCCTATGCCCAATCACTCTTGGTCTTATATAGAAGGAGGTTTCTTTGTAATTGGAGGTAGGCACCCTGATGGAGTCCAGAGCATGAATTATTAGTTCTTATTAAGTAGGGATATTGGTTGTTGCCAGAAGTCTTCCTGAAGAGAGTGTAAACTATTCCTTTGTGGTTACCTTTTAAGAATAGATTGCATCTAAAGCTCGCATTCAAACAATTTATGTTATTTGACCTACTTTGATTCACTAATTTACTTTGAGGTTTTCTTTGTTTTTGTTTTCCATGTTGTATGGAGGCTTTGGAACCAATTTCATGATGCTTAAAGGTCTCTTTTGGCCTGTAGATTTTTCTGAAAGCCTTAAGTCCACAAAGATCATACTAAGAAATTTGAACAACGTTGTTTTCAAACAATGACGAGGAATCTCTGGTGATTTCTAGGCTTGATTTCCCGATGTCCTCAGTTGTTTGCTGCCTGATTGTCCCATGAGGAAAGGAAAATGTGGCTCTTGATTTTTAGAGATTTTCAATGGGCAAGTGCTGCATCTGATCTGTAAGACATACAGGTGGCATTTTCAAGTTATCTCCATCTCTCCCCTTTCTGTAGCTCAGCTGATATAGAAGTGCAGGCTGTGGGGAGCTGCCTGGGTTCCAGAAGCCTTGGAGATAAAGTTGTTCCTTAGGTATTCATGTGAGGACAGAAAAGGTGCATCCTGAATAGATAACTCCCTTTTGTGCTGTAACCTAAAGGAAACCTGAAGTCAAACATGGGGCAGGGCACAGCACCCATACCAGCTATGGGAAACCAGACGTGGAACATCTGGACTGCTTATTGGCAAACCCTTGGCCTTCAATCAGAAGTCTTTTGCAAATGGAGCCATCAGAAGCCTAAGTACGTTTTAGTTCAAGTCATTGTTCAGCGGCACATCACCTAGGGCCCCTGCACCTGGTCTAGGAAACCTTTGAGATTTCTGAGTTCCATAGGCTACTTTCAGGACCCTCTAAGGGCTGAAGAGATTCCTCTGCCTTTTTAGCATCTCTCACCAGCAAGCATCAGCACTTCTGTGGCAGTTTATGAAACTATGTTGGTAATTTTTAAAGAATCAGGCTAGCTGGGTGCCATGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCCAAGGTGGGCAGATGGCTTGAGCCTAGGAGTTTGAGACCAGCCTGGGCAACATGGCGAAACCCTATCTCCACAAAAAGTACAAAAATTAGGGTGTGATGGCTTGTGTCTGTAGTCCCAGCTACTTGGGAGGCTGAAGTGGGGGGATCACTTGAGCCTGGAAGGTGGAGGCTGCGTGAGCACCACTGCACTTCAGCCTGGACAACAGAGTGGGTCTCTGTCTCAAAAAATAAAAATTAAAAACAAGGAATCAGTCTAAAATAATTTATGGTTCAGGAGCTCACCAAAGTCTTTGAAACAATTGAAAGTAATTCAAAGTGAATTGAGGTAATTCACATGATAGAAAGAAATAGGCAAGGAAACGTCCTTTGAATTGCCAAGTGAGGAGACATGGCTATATTTCCTGACTGCTTTGGGTCATTATGGCTACCTTGTCCTTTATCTTGTCGGAGGCTGCCATGTTGGAGCCCTCAGCGCCATAGGTCTCCTTGTCTTCCCCTTTCTTCTGCCCTTAGTCGTCAGTGAGAACAACAGAAGTTCAGATCATGCTTTCTCACATGTTCCTAGTCTGCTGATTGCTGGGAGAATTAGAAAGGACAGTTGCCATAGGATGGACTTTGCCTTAAGTAGGCTGTCTCCAGAGCAACGAAGGAGGAGGAAGGAGTGAGGCCTATGGTGTTTCATGTGTACCTTTTACCAAGTCGAAGCAGCCATCTTGTCATTGCTAGGGCTGAGGGGAAGCTGCAAAGGTTGGGGGAGTTGATACTCACTTGGCTCTGAGGTATGTTCCCACCACCCAGTGTGATTAAGTGGGATGTTGTTTTCTAGGGTCATAGGAAAGAATGTTCAATTACTCTCCCTTATAGATTTCTCTTAACTTATAACCGTAGAGCTTGTAGACATGAGGCTTCTTGGAAACTGTCTCTTTCTAAAAGGTCTTTCCACCGTTCAGGTCCTATGAGTCTAGCTCTGATGGACCACTGAGTGATTCGTATCTCCCCTTTGCAACACTTGCCCCAAAAGCCCAGATCTAGAGGGATGTGTCAGGTGACCTAACAGGAGGCCTGCTTTGTTTTCTGTTGGTTTCTCCAATTTGGGGGTTTTCCCCATTTCCTTACACCCTGGTTTTCCTTCCTAG
Seq C2 exon
GAGAGAAGAGGTTGCAGAGGGAGAAGTCTGAGCAGGTTCTGGATAACCCAGAAGACCTGAGGGGTCCCATTCATCTCTCTGTGCTGAGACAGGGCAAAAGTCCCTACAAGCGTGGCTTTGATGAGGGGGATGTACACCCCCAAGCTAAGAAGAAGAAAATTGACCTGATTTTCAAGGATGTTCTGGAGGCCTCACTGGAATCTGCGAAGGTGGAAGCCCACCAGTTGGCCCTGAGCACCTCACTGGTCATCAGGAAAGTCCCCAAATACCAGGATGACGCCTACAGTCAGTGTGCAACAACAATGACCCATGGTGTGCAGAATATAGGCCAGACCCAGGGGGAGGGGGACTGGAAGGTCCCCCAGGGGGTCTCCAAGGAGCCAGGCCAATTGGAGGATGAAGAAGAGGAGCCTTCATCATTCAAGGCCGACAGTCCTGCCGAGGCCTCCCTTGCATCTGACCCTCATGAACTTCCCACCACCTCTTTTTGCCCTAACTGTATTCGCCTAAAGAAGAAGGTTCGGGAGCTCCAGGCAGAATTAGACATGCTTAAGTCTGGGAAACTTCCTGAGCCCCCCGTATTGCCACCACAGGTACTGGAGCTCCCAGAGTTCTCGGACCCTGCAGGTAAGTTGGTTTGGATGAGATTATTGTCGGAGGGCAGAGTACGCAGTGGGCTGTGTGGAGGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019485:ENST00000530656:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=NA C2=0.497
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development