RnoEX0069318 @ rn6
Exon Skipping
Gene
ENSRNOG00000008674 | Prdm11
Description
PR/SET domain 11 [Source:RGD Symbol;Acc:1597330]
Coordinates
chr3:81867438-81877930:-
Coord C1 exon
chr3:81877743-81877930
Coord A exon
chr3:81872524-81873135
Coord C2 exon
chr3:81867438-81871483
Length
612 bp
Sequences
Splice sites
3' ss Seq
ACCCTGGTTTTCCTTCCTAGGAG
3' ss Score
10.44
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCCTTCCAGCACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGTCTGCACAGCATGTCCCAGGAAACCATCCACCGCAACCTGGCCCGGG
Seq A exon
GAGAGAAGAGATTGCAGAGAGAGAAGGCTGAGCAAGCCCTGGATAACCCAGAAGACCTAAGGGGTCCCTCCCATTTCCCTGTGTTGAAGCAGGGCAGAAGTCCTTACAAGCGCAGCTTTGATGAGGGGGACCTCCACCCTCAGGCCAAGAAGAAGAAAATAGACCTCATCTTCAAGGACGTCCTGGAAGCCTCACTGGAGTCTGCTAACGCGGAAGGCCGCCAGCTGGCCCTGAGCACCTCCCTGGTCATCCGGAAAGTCCCCAAGTACCAGGACGATGACTATGGTAGAGCTGCCCTGACACAAGGCATCTGCAGGACCCCAGGGGAAGGGGACTGGAAGGTCCCTCAAAAGGTGGCCAAGGAGCTAGGCCCACTGGAAGATGAAGAGGAGGAGCATACGTCGTTCAAGGCCGACAGCCCCGCTGAGGCCTCTCTGGCATCTGACCCCCACGAGCTGCCCACCACCTCCTTTTGCCCTAACTGCATCCGACTGAAAAAGAAAGTGCGGGAATTGCAGGCGGAGCTAGATATGCTTAAGTCTGGAAAGGTGCCTGAGCCTCCCATTCTGCCACAGCAGGTACTGGAGCTCCCAGAGTTCTCAGATCCTGCAG
Seq C2 exon
CTTCAGAGAGTATGGTCTCCTGCCCAGCCATCATGGAGGACGACGACCAGGAAGTGGATTCTGCAGACGAATCTGTCTCCAATGACGTGATGACGGCAACCGACGAACCCTCCAAGTTGTCCTCTGCCACGGGACGCCGCATCCGGCGCTTCAAGCAGGAGTGGCTGAAGAAGTTCTGGTTCCTAAGGTACTCCCCGACCCTCAACGAGATGTGGTGCCATGTGTGCCGCCAGTACACGGTGCAGTCCTCACGCACGTCCGCCTTCATCATCGGCTCCAAGCAGTTCAAGATCCACACCATCAAACTGCACAGTCAGAGTAACCTGCACAAGAAGTGCCTGCAGCTGTACAAGCTGCGCATGCACCCGGAGAAGACAGAGGAGATGTGCCGCAACATGACCCTGCTCTTCAACACTGCCTACCACCTGGCACTGGAGGGAAGGCCCTACCTCGACTTCCGGCCACTGGCAGAGCTGCTGCGTAAGTGCGAGCTCAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008674-'10-14,'10-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=0.541 C2=0.054
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(43.6=64.1)
A:
NO
C2:
PF056999=Dimer_Tnp_hAT=WD(100=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGGACTACATGAAGCGTC
R:
AACTGCTTGGAGCCGATGATG
Band lengths:
352-964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]