HsaEX7005992 @ hg38
Exon Skipping
Gene
ENSG00000019485 | PRDM11
Description
PR/SET domain 11 [Source:HGNC Symbol;Acc:HGNC:13996]
Coordinates
chr11:45219570-45235110:+
Coord C1 exon
chr11:45219570-45219757
Coord A exon
chr11:45224217-45224843
Coord C2 exon
chr11:45225995-45235110
Length
627 bp
Sequences
Splice sites
3' ss Seq
ACCCTGGTTTTCCTTCCTAGGAG
3' ss Score
10.44
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTACGTGGTCATCTCCCGGGAGGAGAGGGAGCAGAACCTGCTGGCGTTCCAGCACAGTGAGCGCATCTACTTCCGGGCGTGCAGGGACATCCGGCCTGGGGAGTGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCACAGCATGTCCCAGGAAACCATTCACCGCAACCTGGCCAGAG
Seq A exon
GAGAGAAGAGGTTGCAGAGGGAGAAGTCTGAGCAGGTTCTGGATAACCCAGAAGACCTGAGGGGTCCCATTCATCTCTCTGTGCTGAGACAGGGCAAAAGTCCCTACAAGCGTGGCTTTGATGAGGGGGATGTACACCCCCAAGCTAAGAAGAAGAAAATTGACCTGATTTTCAAGGATGTTCTGGAGGCCTCACTGGAATCTGCGAAGGTGGAAGCCCACCAGTTGGCCCTGAGCACCTCACTGGTCATCAGGAAAGTCCCCAAATACCAGGATGACGCCTACAGTCAGTGTGCAACAACAATGACCCATGGTGTGCAGAATATAGGCCAGACCCAGGGGGAGGGGGACTGGAAGGTCCCCCAGGGGGTCTCCAAGGAGCCAGGCCAATTGGAGGATGAAGAAGAGGAGCCTTCATCATTCAAGGCCGACAGTCCTGCCGAGGCCTCCCTTGCATCTGACCCTCATGAACTTCCCACCACCTCTTTTTGCCCTAACTGTATTCGCCTAAAGAAGAAGGTTCGGGAGCTCCAGGCAGAATTAGACATGCTTAAGTCTGGGAAACTTCCTGAGCCCCCCGTATTGCCACCACAGGTACTGGAGCTCCCAGAGTTCTCGGACCCTGCAG
Seq C2 exon
CCTCAGAAAGCATGGTCTCCGGCCCCGCCATCATGGAGGATGATGACCAGGAAGTCGATTCAGCAGATGAATCTGTCTCCAATGATATGATGACAGCGACGGATGAGCCCTCCAAGATGTCATCGGCCACCGGGCGCCGAATCCGGCGCTTTAAGCAGGAATGGCTGAAGAAGTTCTGGTTCCTGCGGTACTCCCCAACCCTCAATGAGATGTGGTGCCACGTCTGCCGCCAGTACACGGTGCAGTCCTCACGCACCTCGGCCTTCATCATTGGCTCCAAGCAGTTTAAGATTCACACCATCAAACTTCACAGCCAGAGCAACCTGCACAAGAAGTGCCTGCAACTGTACAAGCTCCGCATGCACCCGGAGAAGACAGAGGAGATGTGTCGCAACATGACCCTGCTCTTCAACACCGCCTACCACCTGGCCTTGGAGGGCAGGCCCTACCTGGACTTCCGGCCCCTGGCGGAGCTGCTGAGGAAGTGTGAGCTCAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019485-'22-24,'22-23,24-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.538 C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF056999=Dimer_Tnp_hAT=WD(100=9.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTGAGCGCATCTACTT
R:
GGCACCACATCTCATTGAGGG
Band lengths:
356-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains