MmuEX0036945 @ mm10
Exon Skipping
Gene
ENSMUSG00000075028 | Prdm11
Description
PR domain containing 11 [Source:MGI Symbol;Acc:MGI:2685553]
Coordinates
chr2:92964808-92980698:-
Coord C1 exon
chr2:92980511-92980698
Coord A exon
chr2:92975250-92975861
Coord C2 exon
chr2:92964808-92974182
Length
612 bp
Sequences
Splice sites
3' ss Seq
ACCCTGGTTTTCCTTCCTAGGAG
3' ss Score
10.44
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTACGTGGTCATTTCCCGGGAGGAGAGGGAGCAGAACCTCCTGGCGTTCCAGCACAGCGAGCGCATCTACTTCCGGGCATGCCGAGACATCCGGCCAGGAGAGCGGCTGCGGGTCTGGTACAGCGAGGACTACATGAAGCGCCTGCATAGCATGTCCCAGGAAACCATCCACCGCAACTTAGCCCGGG
Seq A exon
GAGAGAAGAGGTTGCAGAGAGAGAAGGCTGAGCAAGCCCTGGAAAACCCAGAAGACCTAAGGGGTCCCACTCAGTTCCCTGTGTTGAAGCAGGGCAGAAGTCCTTACAAGCGCAGCTTTGATGAGGGAGACATACACCCTCAGGCAAAGAAGAAGAAAATAGATCTCATCTTCAAGGATGTGCTAGAGGCCTCACTGGAGTCTGGTAACGTGGAAGCCCGCCAGCTGGCCCTGAGCACCTCCCTGGTCATCCGGAAAGTCCCCAAGTACCAGGACGATGACTATGGTAGAGCTGCCCTGACGCAAGGCATCTGCAGGACCCCGGGGGAAGGGGACTGGAAGGTCCCTCAAAGGGTGGCCAAAGAGCTGGGCCCACTGGAAGATGAAGAGGAGGAGCCTACATCATTCAAGGCTGACAGCCCTGCAGAGGCCTCTCTGGCATCTGACCCCCATGAGCTGCCTACCACCTCCTTTTGTCCTAACTGCATTCGCCTGAAAAAGAAAGTGCGGGAATTGCAGGCGGAGCTAGACATGCTTAAGTCTGGAAAGCTGCCTGAGCCCTCCCTTCTGCCACCACAGGTGCTTGAGCTCCCAGAGTTCTCAGATCCTGCAG
Seq C2 exon
CCTCAGAGAGTATGGTCTCCGGCCCCGCCATCATGGAGGACGATGACCAGGAAGTGGATTCTGCAGATGAATCTGTCTCCAACGACGTGATGACGGCAACCGATGAACCCTCCAAGATGTCCTCTGCCACAGGACGCCGCATCCGGCGCTTCAAGCAGGAGTGGCTGAAAAAGTTCTGGTTCCTACGGTACTCCCCGACCCTGAATGAGATGTGGTGTCACGTGTGCCGCCAGTACACGGTTCAGTCCTCACGCACTTCCGCTTTCATCATCGGCTCCAAGCAGTTTAAGATCCACACCATCAAGCTGCACAGCCAGAGCAACCTGCACAAGAAATGCCTGCAGCTGTACAAACTGCGCATGCACCCGGAGAAGACTGAGGAGATGTGCCGCAACATGACCCTGCTCTTCAACACCGCCTACCACCTGGCGCTGGAGGGGAGGCCCTACCTCGACTTCCGGCCCCTGGCAGAGCTGCTGCGGAAGTGCGAGCTCAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075028_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.109 A=0.412 C2=NA
Domain overlap (PFAM):
C1:
PF0085623=SET=PD(43.6=64.1)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACATGAAGCGCCTGCAT
R:
AACTGCTTGGAGCCGATGATG
Band lengths:
347-959
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types