DreEX0060449 @ danRer10
Exon Skipping
Gene
ENSDARG00000015460 | racgap1
Description
Rac GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1917]
Coordinates
chr23:33836495-33837579:-
Coord C1 exon
chr23:33837381-33837579
Coord A exon
chr23:33836917-33837022
Coord C2 exon
chr23:33836495-33836627
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTCTATTTATTTTTGTAGAGC
3' ss Score
7.78
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACTGGTTTGTACCGGGTATCTGGCTCTGATCGAGTGGTCAAGGACCTGAAAGAAAAGTTCCTGCGTGGGAAGACTGTTCCCCTGCTCAGCAAGGTGGAAGACATCCATGCTATCACTGGCCTCCTCAAGGACTTCCTAAGGAACCTCAAAGAGCCCCTGCTAACCTTCCGCCTCAATCGGGCATTCATGGATGCTGCAG
Seq A exon
AGCTGTCAGATGATGACAACAGCATTGCCTTGATGTATCAGAACATCAGTGATCTTCCACAGCCCCACAGAGACACTCTGGCCTTCCTCATCATCCATCTACAAAG
Seq C2 exon
GGTGGCCCAAAGCCCCGCTACAAAGATGGACATCACCAATCTGGCTCGTGTATTTGGACCCACAATTGTAGGCCATGCCGTTTCTAACCCAGAACCAATGACCATCCTACAGGACACAAAACGACAACCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015460-'14-16,'14-14,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.267
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.7=100)
A:
PF0062022=RhoGAP=FE(23.2=100)
C2:
PF0062022=RhoGAP=PD(20.5=68.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCGGGTATCTGGCTCTG
R:
GGGTCCAAATACACGAGCCAG
Band lengths:
253-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]