GgaEX1047869 @ galGal4
Exon Skipping
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:340643-341856:+
Coord C1 exon
chrLGE22C19W28_E50C23:340643-340841
Coord A exon
chrLGE22C19W28_E50C23:341457-341562
Coord C2 exon
chrLGE22C19W28_E50C23:341724-341856
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTAAATTTTTTCGCTTCAGAAA
3' ss Score
8.41
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
AAGGGCCTTTACCGGATATCTGGCTGTGACAAGACAGTGAGAGAACTGAAAGAGAAGTTTCTCAGATCAAAAAATATTCCTTCGCTCAGTAATGTGGATGATATCCACGCCATCTGCGGTCTCCTGAAAGACTTTCTACGCAACCTGAAAGAGCCCCTTCTCACTTTTCGGTTAAACAAGACTTTTATGGAAGCTGCAG
Seq A exon
AAATCTTAGATGAGGACAACAGCATAGCTGCTATGTACCAAGCAGTTGGGGAACTTCCTCGGGCCAATAGGGACACCCTGGCTTTTCTCATGGTTCATCTGCAGAG
Seq C2 exon
AGTGGCTCAGAGCCCTGACACCAAAATGGACGTTAACAACTTGGCCAAAGTCTTTGGCCCCACGATAGTTGCCCATGCAGTGCCTGATCCTGACCCGATGACGCTCCTGCAGGACACAAAGCGGCAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271-'28-19,'28-17,31-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.156
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.7=100)
A:
PF0062022=RhoGAP=FE(23.2=100)
C2:
PF0062022=RhoGAP=PD(20.5=68.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGGATATCTGGCTGTGACA
R:
ATCGTGGGGCCAAAGACTTTG
Band lengths:
255-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]