DreEX0060827 @ danRer10
Exon Skipping
Gene
ENSDARG00000015971 | rapgef1b
Description
Rap guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1001]
Coordinates
chr21:4023520-4036214:+
Coord C1 exon
chr21:4023520-4023746
Coord A exon
chr21:4032089-4032235
Coord C2 exon
chr21:4036128-4036214
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCGACCAATCGCAGAGT
3' ss Score
5.69
5' ss Seq
GCGGTAAAC
5' ss Score
4.42
Exon sequences
Seq C1 exon
TCCTGCAATACATGCAGTTTGTGGAGGATTACTCTGAGCCGCAGCCGTCCGTCTTCTACCAGCTGCCTCAGAGCGAGAGTATTTACGAGCAGCGCAGGAACAAGCGCTTTCAGGAGGTTTACGGCCTCAACGACTCCTACAGCAGCTCCGACTCCATTCCTGCTTCAGCTGCAGATCCGCACGAACGGGTCCCACCACCAGCGCTGCCTCCAAAACTCAGACAACTG
Seq A exon
AGTTCCGAGCCGGTTGGCTTGACCAATAGCGGCAGAGCTCTGGATGGTGGAGGTGTCTCAAACGGGTCTTTGACCAGCTCTCTGCTCTCTCTGGCTGTCTGTCTTCCTTCTGAGTCGTCTCTCTCTGACTCGCTTCTTACCTCAGCG
Seq C2 exon
AGCGAAAGCATTGATGAAAGTGGTGAAGGAGAATATGTAAACCTGTACTCGTCCACACAGGCCAACGGAGAAAACACACACCGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015971_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.801 A=0.531 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCTCAGAGCGAGAGTAT
R:
AGTGCGGTGTGTGTTTTCTCC
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]