DreEX0063855 @ danRer10
Exon Skipping
Gene
ENSDARG00000004697 | rxrgb
Description
retinoid X receptor, gamma b [Source:ZFIN;Acc:ZDB-GENE-040718-34]
Coordinates
chr20:34006838-34008647:+
Coord C1 exon
chr20:34006838-34006982
Coord A exon
chr20:34007757-34007936
Coord C2 exon
chr20:34008487-34008647
Length
180 bp
Sequences
Splice sites
3' ss Seq
AGATGTGTTTATGTTTGCAGGGA
3' ss Score
7.13
5' ss Seq
AAGGTCTGC
5' ss Score
5.38
Exon sequences
Seq C1 exon
ATGAACTCTCTCAGTATGAATGGCAATGAAGACATCAAGCCCCCGCCAGGATTGGCACCGCTGGGCAACATGAGCAGCTACCAGTGCACCAGCCCTGGATCTCTGTCCAAACACATCTGTGCCATCTGTGGAGACCGATCTTCAG
Seq A exon
GGAAGCATTATGGTGTTTATAGTTGTGAAGGCTGCAAGGGCTTCTTTAAGAGGACCATTCGAAAAGACCTGACGTACACATGTCGAGACATTAAAGAGTGCCTGATCGACAAGCGCCAGCGCAACCGCTGCCAATACTGCCGCTACCAGAAGTGCTTGGCCATGGGCATGAAGCGCGAAG
Seq C2 exon
CGGTTCAGGAAGAGAGGCAGCGAGGGAAAGAGAAAAGTGATACTGAGGTGGAAACAACAAGCAGGTTTAATGAAGACATGCCTGTGGATAAAATCCTGGATGCAGAACTGTCAGTCGAACCCAAGACTGAGACGTACACAGAGAGCAGCCCCAGCAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004697-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.408 A=0.000 C2=0.593
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(30.4=69.4),PF0010513=zf-C4=PU(15.7=22.4)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(6.6=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAAGACATCAAGCCCCCG
R:
ACGTCTCAGTCTTGGGTTCGA
Band lengths:
256-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]