DreEX0064253 @ danRer10
Exon Skipping
Gene
ENSDARG00000062968 | sbf1
Description
SET binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-139]
Coordinates
chr4:9943163-9952952:+
Coord C1 exon
chr4:9943163-9943273
Coord A exon
chr4:9944145-9944198
Coord C2 exon
chr4:9952847-9952952
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGACTCCCTTGTGTTCCAGATA
3' ss Score
10.48
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AACTGTTTGAGCCTCATCTACACTGTTCATGTCGATGGCCTCACTGTTCCCATGGAAACAGTGATCGGAAACCTCCTCACCTGCATCATTCCTATAGCTGGCGGCTCTCAG
Seq A exon
ATAAATGATCCCCCTCTTTGTAGTTTATCTGACTGGCTTCTGGGTTGTTTCCAG
Seq C2 exon
AGGACTATAACGCTTGGCGCGGGCGACAGGCAGGTCATCCAGACGCCCATCAACGACTCTCTGCCTGTGAGCGGCTGCAGTGTGGCTCAGCTTTTCAGACAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062968_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
PF0214116=DENN=PD(18.6=72.2),PF0214116=DENN=PU(1.4=11.1)
C2:
PF0214116=DENN=FE(19.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCCTCACTGTTCCCATG
R:
TCACAGGCAGAGAGTCGTTGA
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]