DreEX0064254 @ danRer10
Exon Skipping
Gene
ENSDARG00000062968 | sbf1
Description
SET binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-139]
Coordinates
chr4:9943163-9952952:+
Coord C1 exon
chr4:9943163-9943273
Coord A exon
chr4:9948669-9948698
Coord C2 exon
chr4:9952847-9952952
Length
30 bp
Sequences
Splice sites
3' ss Seq
GCTGTGCCTTGTTAATCTAGCCG
3' ss Score
4.88
5' ss Seq
TCGGTACGC
5' ss Score
8.59
Exon sequences
Seq C1 exon
AACTGTTTGAGCCTCATCTACACTGTTCATGTCGATGGCCTCACTGTTCCCATGGAAACAGTGATCGGAAACCTCCTCACCTGCATCATTCCTATAGCTGGCGGCTCTCAG
Seq A exon
CCGGGCCAGGAGGACAGAGAGGAGAGCTCG
Seq C2 exon
AGGACTATAACGCTTGGCGCGGGCGACAGGCAGGTCATCCAGACGCCCATCAACGACTCTCTGCCTGTGAGCGGCTGCAGTGTGGCTCAGCTTTTCAGACAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062968_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.200 C2=0.014
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
PF0214116=DENN=FE(6.4=100)
C2:
PF0214116=DENN=FE(19.1=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCTCCTCACCTGCATC
R:
TCACAGGCAGAGAGTCGTTGA
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]