GgaEX1050907 @ galGal4
Exon Skipping
Gene
ENSGALG00000012438 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr1:558051-560484:-
Coord C1 exon
chr1:560374-560484
Coord A exon
chr1:558688-558711
Coord C2 exon
chr1:558051-558156
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTGTCTCTATCTCAGCCT
3' ss Score
8.18
5' ss Seq
GTGGTACGC
5' ss Score
6.83
Exon sequences
Seq C1 exon
AACAGCCTGGGCTTGATCTACACCATCTATGTAGACGGGCTGAACGTGTCCCTGGAGAACGTCATTGGGAACTTGCTGACGTGCACCATCCCCATCACCGGTGGAGCCCAG
Seq A exon
CCTGACGCGGACGACGAAGCAGTG
Seq C2 exon
CGGACGATCTCGCTGGGCGCAGGGGACAGGCAGGTGATCCAGACACCCATCAATGACTCGCTTCCCGTCAGCAGCTGCAGTGTGGCTCTGCTCTTCCGGCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012438_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
PF0214116=DENN=FE(3.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Inclusion Isoform:
ENSGALT00000020337fB11695
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTGGAGAACGTCATTGG
R:
TGATGGGTGTCTGGATCACCT
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]