MmuEX0041056 @ mm9
Exon Skipping
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89137261-89138034:-
Coord C1 exon
chr15:89137924-89138034
Coord A exon
chr15:89137603-89137626
Coord C2 exon
chr15:89137261-89137366
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTGTCCTGTGCAGCTG
3' ss Score
11.29
5' ss Seq
GCGGTATGG
5' ss Score
7.67
Exon sequences
Seq C1 exon
AATAGCCTTGGTCTCATCTATGCTATCCACGTGGAAGGCCTGAATGTGAGCCTCGAGAATGTGATCGGGAACCTGCTCACATGTACCGTCCCATTGGCTGGCGGGTCTCAG
Seq A exon
CTGGACTCTGTTGAGGAAGGAGCG
Seq C2 exon
AGAACCATCTCTTTGGGGGCTGGTGACCGGCAGGTCATTCAGACTCCACTGGTAGACTCACTGCCTGTCAGCCGCTGTAGTGTAGCCCTGCTCTTCCGCCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(18.8=100)
A:
PF0214116=DENN=FE(3.7=100)
C2:
PF0214116=DENN=FE(18.3=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTGCTCACATGTACCG
R:
GGCAGTGAGTCTACCAGTGGA
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: