HsaEX1036077 @ hg38
Exon Skipping
Gene
ENSG00000100241 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr22:50466605-50467448:-
Coord C1 exon
chr22:50467338-50467448
Coord A exon
chr22:50466978-50467001
Coord C2 exon
chr22:50466605-50466710
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCCCGTCTGTCCTGTGCAGCTG
3' ss Score
10.81
5' ss Seq
GCGGTATGG
5' ss Score
7.67
Exon sequences
Seq C1 exon
AACAGCCTTGGCCTCATCTATGCCATCCACGTGGAGGGCCTGAATGTGTGCCTGGAGAACGTGATTGGGAACCTGCTGACGTGCACTGTGCCCCTGGCTGGGGGCTCGCAG
Seq A exon
CTGGACTCTGTTGAGGAAGGAGCG
Seq C2 exon
AGGACGATCTCTTTGGGGGCTGGTGACCGGCAGGTCATCCAGACTCCACTGGCCGACTCGCTGCCCGTCAGCCGCTGCAGCGTGGCCCTGCTCTTCCGCCAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100241_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
75%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
PF0214116=DENN=FE(3.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Inclusion Isoform:
ENST00000380817fB25151
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCTGGAGAACGTGATT
R:
AGTGGAGTCTGGATGACCTGC
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains