BtaEX0031417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021337 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:HGNC:10542]
Coordinates
chr5:119983590-119984392:-
Coord C1 exon
chr5:119984282-119984392
Coord A exon
chr5:119983932-119983955
Coord C2 exon
chr5:119983590-119983695
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCCTGTCTGTCCTGTGCAGCTG
3' ss Score
10.9
5' ss Seq
GTGGTACGG
5' ss Score
6.61
Exon sequences
Seq C1 exon
AACAGCCTCGGCCTCATCTACACCATCCACGTAGAGGGTCTGAACGTGGGCCTGGAGAACGTGGTCGGGAATCTGCTGACGTGCGTCATCCCCCTGGCTGGGGGCTCTCAG
Seq A exon
CTGGACTCTGGTGAGGATGGAGTG
Seq C2 exon
AGAACCATCTCTCTGGGCGCTGGGGACCGGCAGGTCATTCAGACCCCGCTCACCGACTCACTGCCCATCAGCCGCTGCAGCGTGGCCCTGCTGTTCCGCCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021337_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(19.7=100)
A:
PF0214116=DENN=FE(3.7=100)
C2:
PF0214116=DENN=FE(19.1=100)
Main Inclusion Isoform:
ENSBTAT00000028448fB6135
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACGTGGTCGGGAATCTG
R:
GTGAGCGGGGTCTGAATGAC
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development