DreEX0064525 @ danRer10
Exon Skipping
Gene
ENSDARG00000062744 | scn1lab
Description
sodium channel, voltage-gated, type I like, alpha b [Source:ZFIN;Acc:ZDB-GENE-060906-1]
Coordinates
chr6:10018521-10022106:-
Coord C1 exon
chr6:10021984-10022106
Coord A exon
chr6:10020602-10020637
Coord C2 exon
chr6:10018521-10018802
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCTTTTCATTTGCAGTAA
3' ss Score
9.81
5' ss Seq
AAGGTTTTT
5' ss Score
3.43
Exon sequences
Seq C1 exon
GTGTCGTTGGTGAGTCTGGTTGCAAATGCTCTTGGTTATTCTGAACTAAGTGCCATTAAGTCCTTGAGAACACTGCGTGCTCTTAGACCTTTGAGAGCATTGTCACGCTTTGAGGGAATGAGG
Seq A exon
TAAACAAATGTTGTGACGTCATCGTGTCTCCACAAG
Seq C2 exon
GTGGTAGTGAACGCTCTTCTTGGAGCCATACCTTCCATCATGAATGTGTTGCTGGTGTGCTTGATCTTCTGGCTGATCTTCAGCATCATGGGGGTGAACCTCTTTGCCGGGAAATATTACTATTGCGTTAATATCACCAACGACGAGCTGTTTCCCGTCAGTGTGGTCAACAATAAGTCTGATTGCTATGCTCTGATTCAAAACAATGATACAGCGCGCTGGAAAAACGTGAAGATTAATTTCGATAATGTGGGAGCCGGATACCTGGCACTTCTGCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062744_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTGCGTGCTCTTAGACC
R:
AGCACACCAGCAACACATTCA
Band lengths:
116-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]