DreEX0066260 @ danRer10
Exon Skipping
Gene
ENSDARG00000063580 | si:ch1073-219n12.1
Description
si:ch1073-219n12.1 [Source:ZFIN;Acc:ZDB-GENE-091204-412]
Coordinates
chr9:3107191-3113306:+
Coord C1 exon
chr9:3107191-3107380
Coord A exon
chr9:3111939-3111983
Coord C2 exon
chr9:3113190-3113306
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTAACCCTCTCCCCGAACAGACA
3' ss Score
8.91
5' ss Seq
TTGGTACAG
5' ss Score
0.92
Exon sequences
Seq C1 exon
GGGTTCAGCAGAGTTACTGGAGGAGTCGGGGGTCCGTGTTTCCCCCTCAGAGTCCATGACCTCCATCCCCACCTGCATGCCCTTCAGCTGGTTTGGGGAGAAGGATAAAGAGCGTGACAGAGAGTCCTCATCCAGCAGTCTACCGTACGCCACTGCAGACGCCAGCACTGAACACAACTCCAAGAACAAG
Seq A exon
ACAAACCTCTCCTGGTCCTCTCTGTTCAGTCGCTCCTTAGATTTG
Seq C2 exon
AGTTTGTCAGTTCTAGACGACTCGAACCCCAGCAGTCCTGCTTCCGAGTTTTCGGGGCTGGTGGTGGAGCCCAACCTGTCGGGCCGCTCTCACACGCTAACCTTCTCGTCCAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063580_MULTIEX2-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.000 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCACTGAACACAACTCCA
R:
GGACGAGAAGGTTAGCGTGTG
Band lengths:
140-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]