DreEX0066261 @ danRer10
Exon Skipping
Gene
ENSDARG00000063580 | si:ch1073-219n12.1
Description
si:ch1073-219n12.1 [Source:ZFIN;Acc:ZDB-GENE-091204-412]
Coordinates
chr9:3107191-3116195:+
Coord C1 exon
chr9:3107191-3107380
Coord A exon
chr9:3113190-3113306
Coord C2 exon
chr9:3116007-3116195
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTTTGTGATGGTCTTGCAGAGT
3' ss Score
7.6
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGGTTCAGCAGAGTTACTGGAGGAGTCGGGGGTCCGTGTTTCCCCCTCAGAGTCCATGACCTCCATCCCCACCTGCATGCCCTTCAGCTGGTTTGGGGAGAAGGATAAAGAGCGTGACAGAGAGTCCTCATCCAGCAGTCTACCGTACGCCACTGCAGACGCCAGCACTGAACACAACTCCAAGAACAAG
Seq A exon
AGTTTGTCAGTTCTAGACGACTCGAACCCCAGCAGTCCTGCTTCCGAGTTTTCGGGGCTGGTGGTGGAGCCCAACCTGTCGGGCCGCTCTCACACGCTAACCTTCTCGTCCAGCGAG
Seq C2 exon
ATGCTGGATGAGGAGTCGAGTTCTGGAGGGAAGGATTATCATTGGCAGAATCGTCCGGTTTCTGATTGGACATCCCAGCAGGTCTGTCATTGGCTGATGGGGATGAACATGGATCAGTACACACCTGAGTTCAGCACGCAGGCCATTGATGGACAGCAGCTTCTCAACCTGGACAGCGACAGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063580_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=0.538 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(69.4=67.2),PF095975=IGR=PU(64.6=48.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCATCCAGCAGTCTACCG
R:
GTCGCTGTCCAGGTTGAGAAG
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]