GgaEX0019944 @ galGal3
Exon Skipping
Gene
ENSGALG00000013233 | LOC395762
Description
NA
Coordinates
chr7:19060273-19069584:+
Coord C1 exon
chr7:19060273-19060468
Coord A exon
chr7:19065476-19065592
Coord C2 exon
chr7:19069396-19069584
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCACTTGTTTGCAGAGT
3' ss Score
7.97
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGGTTCTCGAGAACTGTTGGATGATTCTGGCAACAACCTGTCTGCATCAGATTCAGATTCTCCTGTTCCCACTTGCATGCCTTTCTCTTGGTTTGGAGACAGTCACAAAGAGCCTCAGGTTTCTAGTAGTAGTCTGCACTTTACTCAGAGTGGACAGGACAGCTGTGAACATGGTCAAGACAAGAACAGAAGCAAG
Seq A exon
AGTAGAATTGTCATAGATGATACATACCATAGCAAGCCAAGTTGTGAACTTTCAGGGTTAGTGACAGAACCAAATCTGTCAGGTCGTTCACACACTTTAACCTTCTCTTCAAATGAG
Seq C2 exon
GCATTAGATGATGAATTCACAACAACAGGAAAGCAGAATCAATGGCACAGTAGACCTATCTCTGAATGGACCACACAGCAAGTTTGCCACTGGCTAATGGGAATGAACATGGAGCAGTATATTACAGAGTTTACAGCTATGAACATCGATGGACAGCAGTTAATGCAACTCGACAGTGATAAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013233-'26-34,'26-28,28-34
Average complexity
S
Mappability confidence:
70%=80=60%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.879 A=0.444 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(75.4=68.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAACCTGTCTGCATCA
R:
TGCTGTGTGGTCCATTCAGAG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event