GgaEX0019944 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:17183641-17192951:+
Coord C1 exon
chr7:17183641-17183836
Coord A exon
chr7:17188844-17188960
Coord C2 exon
chr7:17192763-17192951
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCACTTGTTTGCAGAGT
3' ss Score
7.97
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGGTTCTCGAGAACTGTTGGATGATTCTGGCAACAACCTGTCTGCATCAGATTCAGATTCTCCTGTTCCCACTTGCATGCCTTTCTCTTGGTTTGGAGACAGTCACAAAGAGCCTCAGGTTTCTAGTAGTAGTCTGCACTTTACTCAGAGTGGACAGGACAGCTGTGAACATGGTCAAGACAAGAACAGAAGCAAG
Seq A exon
AGTAGAATTGTCATAGATGATACATACCATAGCAAGCCAAGTTGTGAACTTTCAGGGTTAGTGACAGAACCAAATCTGTCAGGTCGTTCACACACTTTAACCTTCTCTTCAAATGAG
Seq C2 exon
GCATTAGATGATGAATTCACAACAACAGGAAAGCAGAATCAATGGCACAGTAGACCTATCTCTGAATGGACCACACAGCAAGTTTGCCACTGGCTAATGGGAATGAACATGGAGCAGTATATTACAGAGTTTACAGCTATGAACATCGATGGACAGCAGTTAATGCAACTCGACAGTGATAAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013233_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.962 A=0.641 C2=0.357
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(66.2=68.3)
Main Inclusion Isoform:
ENSGALT00000021611fB2417
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACAACCTGTCTGCATCA
R:
TGCTGTGTGGTCCATTCAGAG
Band lengths:
248-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]