Special

BtaEX6026278 @ bosTau6

Exon Skipping

Gene
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:HGNC:14946]
Coordinates
chr4:12351499-12378708:+
Coord C1 exon
chr4:12351499-12351656
Coord A exon
chr4:12377755-12377874
Coord C2 exon
chr4:12378685-12378708
Length
120 bp
Sequences
Splice sites
3' ss Seq
GAGCTTTTTTACTTTTTCAGAAT
3' ss Score
8.91
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ACTTTAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCAAAAGTACTGAAAACTCGGGCCCAGCTCTCCTTGAAGAACAGACGCCAGAGACCATCTAGGACAAGACTCTATGACAGTGTCAGCTCAACTGATGGGGAGGACAGTCTGGAGCGAAAG
Seq A exon
AATTTTACCTTCAATGACGATTTCAGTCCTAGCAGCACCAGTTCAGCAGACCTGAGCGGCCTGGGAGCAGAGCCCAAAACGCCCGGACTCTCTCAGTCCTTGGTGCTCTCATCCGACGAG
Seq C2 exon
AGCCTGGATATGATAGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024426-'21-32,'21-31,33-32=AN
Average complexity
A_C3
Mappability confidence:
95%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.835 A=0.550 C2=0.375
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
ENSBTAT00000061346fB5445


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGAAGCAGTCCCAGAGAC
R:
CTCATCATCTATCATATCCAGGCT
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]