GgaEX6019028 @ galGal3
Exon Skipping
Gene
ENSGALG00000009686 | PPP1R9A
Description
NA
Coordinates
chr2:23790451-23803869:+
Coord C1 exon
chr2:23790451-23790608
Coord A exon
chr2:23801873-23801992
Coord C2 exon
chr2:23803846-23803869
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTATCTTTTTTCCCTACAGAAT
3' ss Score
11.65
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ATTTCAACGAGGCAGTGCCAGAAACAGAGAGACTGGACTCAAAGGCTCTGAAAACCCGAGCTCAGCTTTCAGTGAAGAACAAGCGGCAGAGGCCAACTAGGACAAGGCTCTATGACAGCATCAGTTCAACTGATGGAGAGGACAGCCTTGAACGAAAG
Seq A exon
AATTTCACGTTCAACGATGACTTCAGTCCCAGCAGCACAAGTTCAGCTGATCTGAGTGGTTTAGGAGCAGAACCCAAAACCCCAGGTTTCTCACACTCCTTAGCACTATCGTCAGATGAG
Seq C2 exon
AGCCTGGATATGATTGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009686-'12-18,'12-17,16-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.849 A=0.775 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGCCAGAAACAGAGAGA
R:
CTCATCATCAATCATATCCAGGCT
Band lengths:
171-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]