MmuEX6002822 @ mm10
Exon Skipping
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5134017-5157027:+
Coord C1 exon
chr6:5134017-5134174
Coord A exon
chr6:5156121-5156240
Coord C2 exon
chr6:5157004-5157027
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGTTGTATTCATTTTGACAGAAT
3' ss Score
4.73
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ACCTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCGAAAGCATTGAAAACCCGGGCCCAGCTCTCTGTGAAGAACAGGCGCCAGAGGCCCACAAGGACACGGCTCTATGACAGCGTCAGCTCAACTGATGGGGAGGACAGCCTGGAGAGGAAG
Seq A exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGCTCAGCAGACCTGAGTGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCGGATGAG
Seq C2 exon
AGCCTGGATATGATAGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827-'38-55,'38-54,50-55
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=0.942 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAATGAAGCAGTCCCAG
R:
TCGTCATCTATCATATCCAGGCT
Band lengths:
181-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types