DreEX0057683 @ danRer10
Exon Skipping
Gene
ENSDARG00000061304 | ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:ZFIN;Acc:ZDB-GENE-060503-660]
Coordinates
chr19:41567070-41572121:+
Coord C1 exon
chr19:41567070-41567118
Coord A exon
chr19:41569096-41569200
Coord C2 exon
chr19:41571939-41572121
Length
105 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTGCGTCTCCTGCAGGGT
3' ss Score
11.27
5' ss Seq
GAGGTCTTT
5' ss Score
1.02
Exon sequences
Seq C1 exon
CTCCACAGGGCCTTCAGCAGAAAACAGCCCTGAAAGACGCAGGAGCAAG
Seq A exon
GGTCCGGGTGTGTCAGATGAACTCAGTCTCAGCAGTTCGAGTTCGACCGAGATCAGTGGGGTCCTGAGCGGACGATCGCGGACCCTCACACTCTCCTCTGATGAG
Seq C2 exon
ATTGTGGACGAGGGTCTGCCAGTGAAGCCACAGCAGTGGCAGAACCGCAGTGTGACTGAATGGACGTGTCAACAGGTGTCCTGCTGGCTCATGGGACTGAACTTGGAACAATACGTGTCTCTCTTTACTGCCAAGAATTTGGATGGAGAGCAGCTTCTGAAGCTGGACAGCACCGCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061304_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=0.600 C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCCTTCAGCAGAAAACA
R:
CTTGAGAGCGGTGCTGTCC
Band lengths:
227-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]