RnoEX0068923 @ rn6
Exon Skipping
Gene
ENSRNOG00000008869 | Ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:RGD Symbol;Acc:632280]
Coordinates
chr4:30215870-30238895:+
Coord C1 exon
chr4:30215870-30216027
Coord A exon
chr4:30237978-30238097
Coord C2 exon
chr4:30238872-30238895
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTAACAGAAT
3' ss Score
11
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
ACTTGAATGAAGCAGTCCCAGAGACAGAGCGCCTGGATTCGAAAGCGCTGAAAACTCGGGCCCAGCTCTCTGTGAAGAACAGGCGCCAGAGGCCCACAAGGACAAGGCTCTATGACAGCGTCAGCTCCACTGATGGGGAGGACAGCCTGGAGCGGAAG
Seq A exon
AATTTCACCTTCAATGATGACTTCAGTCCAAGCAGTACCAGTTCAGCAGACCTGAGCGGCTTAGGAGCAGAACCCAAAACGCCAGGGCTCTCCCAGTCCTTGGCACTGTCCTCAGATGAG
Seq C2 exon
AGCCTGGACATGATAGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008869-'34-28,'34-27,40-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.927 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000011756fB11217
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGAAGCAGTCCCAGAGAC
R:
TCATCATCTATCATGTCCAGGCT
Band lengths:
178-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]