DreEX0066340 @ danRer10
Exon Skipping
Gene
ENSDARG00000055934 | si:ch1073-416j23.1
Description
si:ch1073-416j23.1 [Source:ZFIN;Acc:ZDB-GENE-100922-35]
Coordinates
chr9:10816076-10819316:-
Coord C1 exon
chr9:10819118-10819316
Coord A exon
chr9:10816304-10816409
Coord C2 exon
chr9:10816076-10816217
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGTCATTTTTTCACTCTCAGAGA
3' ss Score
7.06
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
AAAGGCATTTACAGAGTGCCAGGGGGAGAGCGGCAGGTGAAGGAACTGAGGGAGAAGTATCTTTACGGGAAAGGCCCACTGATGCTTCACAAAGTAGATGAGGTTCATGCTGTCTGCGGGCTCCTCAAAGACTTCCTGAGGAAACTCAGTGAGCCTCTCATCACATTTAAGCTTCACAGAACCTTCATGGAAGCTTCTG
Seq A exon
AGATGGCTGATGAAGACAAGAGCGTAGAAACGTTATTAAAGACTATCAGAGAGCTGCCGCAGCCTAACAGAGACACCCTGGCCTTCCTAATGCTGCATTTACAGAG
Seq C2 exon
GGTGATGCAGAGTCCATTGTGTCAGATGGATCTGAATAACTTATCTAGAGTGTTTGGACCTACAATTATTGGCCACGCAATGTCAGAACCTTCTCCTATGACCATTATGAGAGACACGAACACACAACCCAGAGTGAGTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055934_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.167 C2=0.370
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(33.8=100)
A:
PF0062022=RhoGAP=FE(25.2=100)
C2:
PF0062022=RhoGAP=PD(20.5=64.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCACTGATGCTTCACAAA
R:
TGGGTTGTGTGTTCGTGTCTC
Band lengths:
258-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]