DreEX0067500 @ danRer10
Exon Skipping
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21150635-21155180:-
Coord C1 exon
chr15:21154724-21155180
Coord A exon
chr15:21152054-21152426
Coord C2 exon
chr15:21150635-21150709
Length
373 bp
Sequences
Splice sites
3' ss Seq
AGCAATCCATTGATGCACAGCTC
3' ss Score
1.31
5' ss Seq
CAGGTGGAA
5' ss Score
1.62
Exon sequences
Seq C1 exon
GTTGACTGCCTTTGTCCTGAAGTCTTTTGTCAAAGCACAGAAATACATATATATAGATCCACAAATTATTAAGAGTGCAAAGAAGTGGTTAATAGGTACACAGGATCCAGAAGGCTGTTTCATCCAGCATGGAAGACTATTCAACAACAGACTGAAGGTTTGTCAACTCACTGCCACAATAAAATGTGCATTACTATAACTCTGGAGGTCACATGAACCATTCCTTTGACACCATCATATTGGCAGGCAGGAACCGTCATAAATGAATACAAAATGTATGGGACCAGCATTAATTTTAAGACAACAGAGCTCACTGTGAACTTTAATTGATATAATGTGTTTCATTGATAAAATGGACAGCTTTCCTGACTATGATTAACATCTTTACAGATATTAAGAAATTTAATGCTCTAGAAGAAAACAAGATACAATAAGAGCTGTTACGATTTTAAAGATG
Seq A exon
CTCTACAGATCCCGAACCATGCAAGCCAGAGGTGACAGCGGCGAGGAAAAAACTTCATCAATTGGCGAATTTGAAGAATTAAAAAACCTCGAGAGAAACCAGGCTCAGTTGGGCACGACCATTTCTACTATGGCCAAACGTTTTGTGCAGAGCTGCAGTCTAGGCGCCGGAGGCTGGAGAATGCTGGACCTCAGCGAAGACTTCTCTGTCCCTGGAGCGTCTCATGCTCTTCACTCCTTCAAGACCACCACAGCAGCTGCTCAGGATACGGCCTGGTCCAGGATTATGGAAACCTTGGGATCATCTCATCACTGGTCTTGGATCGAATCAGTGGCACTGCATAGTCTGAGGGCCTCAGGATGAGTATCCCCAG
Seq C2 exon
GGTGGAGTCAGTGATCATGTGACAATGACGGCCTACATTACTGCATCACTGCTTGAACTGGAAACTTCAGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315-'26-24,'26-23,27-24
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTTGTCAACTCACTGCCA
R:
GTGATGCAGTAATGTAGGCCGT
Band lengths:
351-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]