DreEX0067505 @ danRer10
Exon Skipping
Gene
ENSDARG00000095315 | si:ch211-212c13.9
Description
si:ch211-212c13.9 [Source:ZFIN;Acc:ZDB-GENE-131118-22]
Coordinates
chr15:21150635-21156879:-
Coord C1 exon
chr15:21156703-21156879
Coord A exon
chr15:21155024-21155180
Coord C2 exon
chr15:21150635-21150709
Length
157 bp
Sequences
Splice sites
3' ss Seq
TAAATCCTTCACACCACCAGGTT
3' ss Score
5.31
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAGACATAGTGGGTCGTTCACTGAAAAAACTTCACAGAACATTATGGAGGATTTACAGATCTGGTAACCAAAACATAGCTATTCTTTCTCCCAGTATTTACATTCTGCAGTACCTGGAGAACACAAAGCAGCTCACCTCAGCCATCCGAGAGAAAGCCAGCAGCTTCCTTAAGAGCG
Seq A exon
GTTGACTGCCTTTGTCCTGAAGTCTTTTGTCAAAGCACAGAAATACATATATATAGATCCACAAATTATTAAGAGTGCAAAGAAGTGGTTAATAGGTACACAGGATCCAGAAGGCTGTTTCATCCAGCATGGAAGACTATTCAACAACAGACTGAAG
Seq C2 exon
GGTGGAGTCAGTGATCATGTGACAATGACGGCCTACATTACTGCATCACTGCTTGAACTGGAAACTTCAGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095315_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACATAGTGGGTCGTTCACTG
R:
GTTTCCAGTTCAAGCAGTGATGC
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]