BtaEX0001603 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101331521-101333871:+
Coord C1 exon
chr5:101331521-101331608
Coord A exon
chr5:101332772-101332928
Coord C2 exon
chr5:101333797-101333871
Length
157 bp
Sequences
Splice sites
3' ss Seq
CCACTTCCTCTCCCCCACAGGCT
3' ss Score
11.54
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTTACCAGAGACAGCTGCTCTACAAGCACTTCGATGGCTCTTACAGCACCTTTGGGGAGCATCGTGGCAACAGTGAGGGCAATACTTG
Seq A exon
GCTCACGGCCTTTGTACTGAAGAGTTTTGCCCAGGCTCGAGGCTATATCTTCATTGATGAAGCACATATTACTGAAGCTCTCACCTGGCTGGCCCAAAAGCAAAAGAGCAATGGCTGTTTCAGGAGTACTGGGACTCTGCTTAACAATGCCATCAAG
Seq C2 exon
GGTGGGGTGGACGATGAAGTGACCCTCTCTGCCTACATCACCATCGCCCTTCTAGAGATGCCTCTCCCTGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'25-33,'25-32,26-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
PF076789=A2M_comp=FE(20.2=100)
C2:
PF076789=A2M_comp=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCAGAGACAGCTGCTCT
R:
TGTAACAGGGAGAGGCATCT
Band lengths:
163-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development