MmuEX6006750 @ mm9
Exon Skipping
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121618547-121620028:+
Coord C1 exon
chr6:121618547-121618634
Coord A exon
chr6:121619530-121619686
Coord C2 exon
chr6:121619954-121620028
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATTATTCCCACGTCACTCAGGCT
3' ss Score
3.55
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTACCAAAGACAATTAAACTACAAGCACCGGGATGGCTCCTACAGTACTTTTGGGGATAAACCTGGTAGGAGTCATGCCAATACCTG
Seq A exon
GCTCACAGCCTTTGTACTGAAGAGTTTTGCTCAGGCTCGAAGATATATCTTCATCGATGAATCACACATCACCCAAGCCCTCACCTGGCTCTCCCAGCAGCAGAAGGACAATGGCTGCTTCAGGAGCTCCGGGTCACTGCTCAACAATGCCATGAAG
Seq C2 exon
GGAGGAGTAGAAGATGAAGTCACTTTGTCTGCCTACATCACCATTGCTCTCCTGGAGATGTCTCTTCCTGTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.3=100)
A:
PF076789=A2M_comp=FE(20.2=100)
C2:
PF076789=A2M_comp=FE(9.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATTAAACTACAAGCACCGGG
R:
AGTGACAGGAAGAGACATCTCCA
Band lengths:
154-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: