GgaEX0025947 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75556991-75557913:+
Coord C1 exon
chr1:75556991-75557091
Coord A exon
chr1:75557465-75557621
Coord C2 exon
chr1:75557813-75557913
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTCTCCCCAATCAGGCT
3' ss Score
9.77
5' ss Seq
AAAGTAGGA
5' ss Score
3.63
Exon sequences
Seq C1 exon
ATCCTAAACTACTTCTCAGGGTATCAGATACAGCTGCAGTATCAACATCCTGATGGTTCTTTCAGTGAATTTGGTACCAAGGATGAGTACGGTAATACTTG
Seq A exon
GCTGACTGCATTTGTGGTCAAATGCTTTGCCCAAGCCAAGCCATACATTTTCCTGGACGACAGGAGCATTCAAGCTGCTTTCAATTGGCTGGAGTTCCACCAGCTTCCGAATGGCTGCTTCAGGGATGTGGGCCAACTTTTCCACACAGCCATGAAA
Seq C2 exon
GGAGGTATGGATGGGGAAGTTCTCTTGGCTGCCTACATCACTGCTGCATACATGGAGAGAGGAGATACACCAGAGGTAAATATAAGAATCCTTTGCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'45-41,'45-40,46-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTAAACTACTTCTCAGGGTATCA
R:
AGGATTCTTATATTTACCTCTGGTGT
Band lengths:
192-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]