HsaEX6065031 @ hg19
Exon Skipping
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:23336]
Coordinates
chr12:9010103-9013551:+
Coord C1 exon
chr12:9010103-9010184
Coord A exon
chr12:9010542-9010698
Coord C2 exon
chr12:9013477-9013551
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTTTACCCATGTAGGCT
3' ss Score
9.28
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGTACCAGAAGGAGCTGATGTACAAACACAGCAATGGCTCATACAGTGCCTTTGGGGAGCGAGATGGAAATGGAAACACATG
Seq A exon
GCTGACAGCGTTTGTCACAAAATGCTTTGGCCAAGCTCAGAAATTCATCTTCATTGATCCCAAGAACATCCAGGATGCTCTCAAGTGGATGGCAGGAAACCAGCTCCCCAGTGGCTGCTATGCCAACGTGGGAAATCTCCTTCACACAGCTATGAAG
Seq C2 exon
GGTGGTGTTGATGATGAGGTCTCCTTGACTGCGTATGTCACAGCTGCATTGCTGGAGATGGGAAAGGATGTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(11.0=100)
A:
PF076789=A2M_comp=FE(21.1=100)
C2:
PF076789=A2M_comp=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCAGAAGGAGCTGATGT
R:
TACATCCTTTCCCATCTCCAGCA
Band lengths:
154-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)