BtaEX6024163 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101509838-101513656:-
Coord C1 exon
chr5:101513575-101513656
Coord A exon
chr5:101512642-101512798
Coord C2 exon
chr5:101509838-101509912
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTCTTTACCATATAGGCT
3' ss Score
9.82
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGTACCAGAGGGAACTGATGTACAAACACAGTAATGGCTCCTACAGTGCCTTTGGGGAGCAAGATGGAAATGGAAACACATG
Seq A exon
GCTGACAGCCTTTGTCACCAAATGCTTTGGCCAGGCTCGGCAATTCATCTTCATTGACGACAAGAACATCCAGGATGCTCTTGAGTGGATGGCAGGAAACCAGCTCTCCAGTGGCTGCTACGACAACGTGGGAAAGCTCCTTCAAACATCTATGAAG
Seq C2 exon
GGTGGAGTTGATGATGAGGTCTCCTTGACTGCCTACATTACAGCTGCATTGTTGGAAATGGGCAAGACCATAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(16.2=100)
A:
PF076789=A2M_comp=FE(31.1=100)
C2:
PF076789=A2M_comp=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCAGAGGGAACTGATGT
R:
TATGGTCTTGCCCATTTCCAACA
Band lengths:
154-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]