GgaEX0025943 @ galGal4
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr1:75556720-75557565:+
Coord C1 exon
chr1:75556720-75556820
Coord A exon
chr1:75557010-75557091
Coord C2 exon
chr1:75557465-75557565
Length
82 bp
Sequences
Splice sites
3' ss Seq
CATCCTAAACTACTTCTCAGGGT
3' ss Score
4.82
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GGTACTGTTTGCCCCCATTGTCTATATGCTGCAGTACCTGGAGAAGACAAGGCAGCTGACTCCTGAGATTAAGGAGAGGGCAACAGGATTCTTGCGCAATG
Seq A exon
GGTATCAGATACAGCTGCAGTATCAACATCCTGATGGTTCTTTCAGTGAATTTGGTACCAAGGATGAGTACGGTAATACTTG
Seq C2 exon
GCTGACTGCATTTGTGGTCAAATGCTTTGCCCAAGCCAAGCCATACATTTTCCTGGACGACAGGAGCATTCAAGCTGCTTTCAATTGGCTGGAGTTCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254-'44-40,'44-39,45-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTGTTTGCCCCCATTGT
R:
CAGCTTGAATGCTCCTGTCGT
Band lengths:
178-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]