BtaEX0001604 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004097 | A2ML1
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr5:101512642-101513997:-
Coord C1 exon
chr5:101513821-101513997
Coord A exon
chr5:101513575-101513656
Coord C2 exon
chr5:101512642-101512798
Length
82 bp
Sequences
Splice sites
3' ss Seq
AACCACATCTGGCTTCCCAGGGT
3' ss Score
4.84
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GAGACATCATGGGCACAGCCCTGCAGAACCTGGACAACTTGGTGCAGATGCCAAGGGGCTGTGGGGAGCAGAACATGGTCTTGTTCGCACCTATCATTTACGTCCTGCAGTACCTGGAGAAGACAGAGCTGCTGACGGAGGAAATCTGGTCTCGAGCAGTGGGCTTCCTGAAGCTGG
Seq A exon
GGTACCAGAGGGAACTGATGTACAAACACAGTAATGGCTCCTACAGTGCCTTTGGGGAGCAAGATGGAAATGGAAACACATG
Seq C2 exon
GCTGACAGCCTTTGTCACCAAATGCTTTGGCCAGGCTCGGCAATTCATCTTCATTGACGACAAGAACATCCAGGATGCTCTTGAGTGGATGGCAGGAAACCAGCTCTCCAGTGGCTGCTACGACAACGTGGGAAAGCTCCTTCAAACATCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004097-'24-26,'24-25,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.6=1.7)
A:
PF076789=A2M_comp=FE(16.2=100)
C2:
PF076789=A2M_comp=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGTCCTGCAGTACCTGGAG
R:
CTGGTTTCCTGCCATCCACTC
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development