GgaEX0025943 @ galGal3
Exon Skipping
Gene
ENSGALG00000019254 | A2ML1
Description
NA
Coordinates
chr1:79201232-79202209:+
Coord C1 exon
chr1:79201232-79201408
Coord A exon
chr1:79201598-79201679
Coord C2 exon
chr1:79202053-79202209
Length
82 bp
Sequences
Splice sites
3' ss Seq
CATCCTAAACTACTTCTCAGGGT
3' ss Score
4.82
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTGACCTCATGGGGACAGCACTGCAAAACTTGGACCACCTGGTGCAGATGCCCCATGGCTGTGGGGAGCAGAACATGGTACTGTTTGCCCCCATTGTCTATATGCTGCAGTACCTGGAGAAGACAAGGCAGCTGACTCCTGAGATTAAGGAGAGGGCAACAGGATTCTTGCGCAATG
Seq A exon
GGTATCAGATACAGCTGCAGTATCAACATCCTGATGGTTCTTTCAGTGAATTTGGTACCAAGGATGAGTACGGTAATACTTG
Seq C2 exon
GCTGACTGCATTTGTGGTCAAATGCTTTGCCCAAGCCAAGCCATACATTTTCCTGGACGACAGGAGCATTCAAGCTGCTTTCAATTGGCTGGAGTTCCACCAGCTTCCGAATGGCTGCTTCAGGGATGTGGGCCAACTTTTCCACACAGCCATGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000019254_MULTIEX1-20/25=19-21
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
PF076789=A2M_comp=FE(11.0=100)
C2:
PF076789=A2M_comp=FE(21.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGCTGACTCCTGAGATT
R:
CACATCCCTGAAGCAGCCATT
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event